Information for 4-CMHSCACGTG (Motif 4)

T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G
Reverse Opposite:
A G T C C T G A A G T C A C T G A G C T A C T G A T G C C G A T A C T G A C T G
p-value:1e-19
log p-value:-4.473e+01
Information Content per bp:1.679
Number of Target Sequences with motif95.0
Percentage of Target Sequences with motif10.78%
Number of Background Sequences with motif1720.7
Percentage of Background Sequences with motif3.68%
Average Position of motif in Targets49.0 +/- 21.1bp
Average Position of motif in Background48.9 +/- 37.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Arnt/MA0004.1/Jaspar

Match Rank:1
Score:0.95
Offset:4
Orientation:forward strand
Alignment:CMHSCACGTG
----CACGTG
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G
A C G T A C G T A C G T A C G T G T A C C T G A A G T C A C T G A C G T A C T G

NPAS(bHLH)/Liver-NPAS-ChIP-Seq(GSE39860)/Homer

Match Rank:2
Score:0.94
Offset:2
Orientation:forward strand
Alignment:CMHSCACGTG
--NVCACGTG
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G
A C G T A C G T C G A T T G C A G T A C C G T A A G T C C T A G G A C T C A T G

MNT/MA0825.1/Jaspar

Match Rank:3
Score:0.94
Offset:2
Orientation:forward strand
Alignment:CMHSCACGTG--
--ACCACGTGCC
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T A C G T
A C G T A C G T C T G A T A G C G T A C C G T A A G T C C T A G A C G T A C T G T G A C G A T C

MAX/MA0058.3/Jaspar

Match Rank:4
Score:0.93
Offset:2
Orientation:forward strand
Alignment:CMHSCACGTG--
--ACCACGTGCT
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T A C G T
A C G T A C G T T G C A T G A C G T A C C T G A A G T C T C A G G A C T A C T G A T G C G A C T

Id2/MA0617.1/Jaspar

Match Rank:5
Score:0.93
Offset:3
Orientation:forward strand
Alignment:CMHSCACGTG-
---GCACGTGA
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T
A C G T A C G T A C G T T C A G A G T C C G T A A G T C A C T G A C G T A C T G C T G A

Mlxip/MA0622.1/Jaspar

Match Rank:6
Score:0.93
Offset:3
Orientation:forward strand
Alignment:CMHSCACGTG-
---GCACGTGT
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T
A C G T A C G T A C G T A C T G A G T C C G T A A G T C A C T G A C G T A C T G C A G T

BMAL1(bHLH)/Liver-Bmal1-ChIP-Seq(GSE39860)/Homer

Match Rank:7
Score:0.93
Offset:4
Orientation:reverse strand
Alignment:CMHSCACGTG--
----CACGTGNC
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A A G T C C T A G G C A T A C T G G T C A G A T C

CLOCK(bHLH)/Liver-Clock-ChIP-Seq(GSE39860)/Homer

Match Rank:8
Score:0.93
Offset:4
Orientation:reverse strand
Alignment:CMHSCACGTG--
----CACGTGDC
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G A T C C T G A A G T C C T A G G C A T C T A G C G T A G A T C

c-Myc(bHLH)/LNCAP-cMyc-ChIP-Seq(Unpublished)/Homer

Match Rank:9
Score:0.93
Offset:4
Orientation:reverse strand
Alignment:CMHSCACGTG--
----CACGTGGN
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T G T A C C T G A A G T C C T A G G A C T A C T G A T C G A G C T

bHLHE40(bHLH)/HepG2-BHLHE40-ChIP-Seq(GSE31477)/Homer

Match Rank:10
Score:0.92
Offset:3
Orientation:forward strand
Alignment:CMHSCACGTG---
---KCACGTGMCN
 T G A C T G A C G C T A T A C G G T A C C T G A G T A C C T A G G A C T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C A T G G T A C C G T A A G T C C T A G A C G T A C T G G T A C A G T C A G C T