Information for 1-TTYRAAAACAAAC (Motif 2)

A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C
Reverse Opposite:
C T A G A C G T A C G T A C G T C A T G A G C T A C G T A C G T A C G T A G C T C T G A C G T A C T G A
p-value:1e-20
log p-value:-4.746e+01
Information Content per bp:1.824
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.70%
Number of Background Sequences with motif17.0
Percentage of Background Sequences with motif0.04%
Average Position of motif in Targets60.4 +/- 23.4bp
Average Position of motif in Background49.2 +/- 41.0bp
Strand Bias (log2 ratio + to - strand density)-1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0182.1_Srf_2/Jaspar

Match Rank:1
Score:0.78
Offset:-1
Orientation:forward strand
Alignment:-TTYRAAAACAAAC---
GTTAAAAAAAAAAATTA
 A C G T A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C A C G T A C G T A C G T
T A C G A C G T C G A T C G T A C T G A C T G A T G C A T G C A G T C A G C T A G T C A G T C A G T C A T G C A A C G T G C A T G C A T

PB0116.1_Elf3_2/Jaspar

Match Rank:2
Score:0.73
Offset:-1
Orientation:forward strand
Alignment:-TTYRAAAACAAAC---
GTTCAAAAAAAAAATTC
 A C G T A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C A C G T A C G T A C G T
C A T G A G C T A C G T G T A C G T C A C G T A G C T A G C T A G C T A G C T A G C T A G C T A G C T A G T C A G A C T C G A T G A T C

LIN54/MA0619.1/Jaspar

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--TTYRAAAACAAAC
NATTCAAAT------
 A C G T A C G T A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C
C T G A C T G A A C G T A C G T A G T C C T G A C G T A C G T A G C A T A C G T A C G T A C G T A C G T A C G T A C G T

Foxd3/MA0041.1/Jaspar

Match Rank:4
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TTYRAAAACAAAC----
-----AAACAAACATTC
 A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C T G A T G C A C T G A G A T C G T C A C G T A C G T A G A T C C T G A C G A T C G A T G A T C

MF0005.1_Forkhead_class/Jaspar

Match Rank:5
Score:0.64
Offset:5
Orientation:reverse strand
Alignment:TTYRAAAACAAAC-
-----AAATAAACA
 A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C A C G T
A C G T A C G T A C G T A C G T A C G T T C G A G T C A T C G A G A C T G T C A C T G A T C G A G A T C C G T A

NF1:FOXA1(CTF,Forkhead)/LNCAP-FOXA1-ChIP-Seq(GSE27824)/Homer

Match Rank:6
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:TTYRAAAACAAAC---
TGCCAAAATAAACANN
 A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C A C G T A C G T A C G T
C G A T A C T G T A G C G T A C C G T A C T G A C T G A C T G A G A C T G T C A G T C A C T G A A G T C C G T A C T G A G C T A

PB0192.1_Tcfap2e_2/Jaspar

Match Rank:7
Score:0.63
Offset:-2
Orientation:forward strand
Alignment:--TTYRAAAACAAAC
TACTGGAAAAAAAA-
 A C G T A C G T A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C
G C A T C T G A T G A C C A G T A C G T T C A G C G T A C G T A T C G A T C G A G C T A G T C A C G T A C T G A A C G T

IRF3(IRF)/BMDM-Irf3-ChIP-Seq(GSE67343)/Homer

Match Rank:8
Score:0.61
Offset:2
Orientation:reverse strand
Alignment:TTYRAAAACAAAC-
--GAAAMTGAAACT
 A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C A C G T
A C G T A C G T C T A G T C G A C T G A G T C A T G A C A G C T T C A G T C G A C T G A C G T A A T G C G A C T

FOXA1(Forkhead)/MCF7-FOXA1-ChIP-Seq(GSE26831)/Homer

Match Rank:9
Score:0.59
Offset:4
Orientation:forward strand
Alignment:TTYRAAAACAAAC-
----AAAGTAAACA
 A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C A C G T
A C G T A C G T A C G T A C G T G C T A T C G A C G T A C T A G A G C T G T C A G T C A C G T A A G T C C G T A

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:10
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TTYRAAAACAAAC
CGGTTTCAAA-------
 A C G T A C G T A C G T A C G T A G C T A C G T A G C T C T G A C G T A C G T A T G C A C T G A G T A C C G T A C G T A G T C A A G T C
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T