Information for 2-ACGGATAGTC (Motif 3)

C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C A C G T G T C A C G A T A T G C A G T C A T C G C G A T
p-value:1e-14
log p-value:-3.312e+01
Information Content per bp:1.871
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.87%
Number of Background Sequences with motif4.0
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets70.8 +/- 11.9bp
Average Position of motif in Background50.2 +/- 23.4bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RELA/MA0107.1/Jaspar

Match Rank:1
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ACGGATAGTC--
--GGAAATTCCC
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C T G A C T G C T G A C G T A C G T A A G C T A G C T A G T C G T A C T A G C

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.57
Offset:0
Orientation:forward strand
Alignment:ACGGATAGTC
ATGAATATTC
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PH0015.1_Crx/Jaspar

Match Rank:3
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ACGGATAGTC-------
-AGGCTAATCCCCAANG
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

SD0003.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:ACGGATAGTC-
AAGGATATNTN
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C A C G T
T C G A C G T A C T A G T A C G C G T A A G C T C G T A A C G T A G T C C G A T C G A T

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:5
Score:0.54
Offset:2
Orientation:forward strand
Alignment:ACGGATAGTC--
--GGAAATTCCC
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C

PB0136.1_IRC900814_2/Jaspar

Match Rank:6
Score:0.54
Offset:0
Orientation:forward strand
Alignment:ACGGATAGTC------
ATGGAAAGTCGTAAAA
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C T G A A G C T A C T G C T A G C T G A T C G A G T C A A C T G G A C T A G T C C A T G A C G T C T G A C G T A T C G A G C T A

PRDM1(Zf)/Hela-PRDM1-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.53
Offset:-3
Orientation:reverse strand
Alignment:---ACGGATAGTC
GAAAGTGAAAGT-
 A C G T A C G T A C G T C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C
T C A G C G T A T G C A C T G A C T A G C G A T C T A G G C T A T C G A C G T A A C T G A G C T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ACGGATAGTC--
--GGAAANCCCC
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T
A C G T A C G T A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--ACGGATAGTC-----
NNANTGGTGGTCTTNNN
 A C G T A C G T C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ACGGATAGTC
ATGMATATDC
 C G T A T A G C A C T G A T C G C G T A A C G T C G T A A C T G A C G T A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C