Information for 5-TTCTGACCTAATT (Motif 9)

A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T
Reverse Opposite:
C T G A C G T A C G A T A C G T C T G A A C T G A C T G A C G T A G T C C G T A A T C G C T G A C G T A
p-value:1e-10
log p-value:-2.460e+01
Information Content per bp:1.928
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets60.8 +/- 24.7bp
Average Position of motif in Background25.0 +/- 10.1bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:1
Score:0.80
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTAATT
---TGACCTARTT
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T
A C G T A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

RORA(var.2)/MA0072.1/Jaspar

Match Rank:2
Score:0.79
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTAATT---
--TTGACCTANTTATN
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T A C G T A C G T A C G T
A C G T A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

RORA/MA0071.1/Jaspar

Match Rank:3
Score:0.68
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTAATT
---TGACCTTGAT
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T
A C G T A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTAATT
---TGACCT----
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T
A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:5
Score:0.67
Offset:3
Orientation:reverse strand
Alignment:TTCTGACCTAATT
---TGACCTYA--
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T
A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

PH0045.1_Hoxa1/Jaspar

Match Rank:6
Score:0.65
Offset:2
Orientation:forward strand
Alignment:TTCTGACCTAATT-----
--CTGAGCTAATTACCGT
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A G T C G A C T C T A G C T G A T C A G A T G C G A C T T G C A C G T A C G A T A C G T C T G A T G A C A G T C A C T G A G C T

PH0103.1_Meox1/Jaspar

Match Rank:7
Score:0.64
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTAATT-----
--CTGAGGTAATTACCNC
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G A T C C G A T T C A G C T G A C A T G T A C G G A C T T G C A G C T A C A G T A C G T C T G A G T A C G T A C A C G T A G T C

PH0058.1_Hoxb3/Jaspar

Match Rank:8
Score:0.64
Offset:3
Orientation:forward strand
Alignment:TTCTGACCTAATT-------
---TGAGCTAATTAGTTGGA
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T A C G T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T C G A T T C A G T G C A T A C G A T G C G A C T G T C A C G T A C G A T A C G T C T G A T A C G A G C T C A G T T C A G C T A G C G T A

PH0021.1_Dlx2/Jaspar

Match Rank:9
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTAATT-----
--CTGANNTAATTATNNN
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A G C G A C T C A T G C T G A C T A G T A C G G A C T C G T A C G T A C G A T A C G T C T G A G A C T G A C T A G T C A G T C

PH0081.1_Pdx1/Jaspar

Match Rank:10
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:TTCTGACCTAATT-----
--NTGNGCTAATTACCNN
 A C G T A G C T A T G C A C G T A C T G C G T A A G T C A G T C A G C T C G T A C G T A A C G T A G C T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T G T C A G A C T A T C G C G T A C T A G A T G C G A C T T G C A G C T A C A G T A C G T C T G A T A G C G A T C A C G T A C G T