Information for 13-CAGCCTTGAGAAT (Motif 19)

G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T
Reverse Opposite:
C T G A A C G T A G C T A G T C A C G T A G T C C G T A C G T A A T C G A T C G A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.772e+01
Information Content per bp:1.869
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif4.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets43.2 +/- 19.7bp
Average Position of motif in Background46.4 +/- 20.4bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.20
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Rbpj1(?)/Panc1-Rbpj1-ChIP-Seq(GSE47459)/Homer

Match Rank:1
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:CAGCCTTGAGAAT-
----CSTGGGAAAD
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T A C G T
A C G T A C G T A C G T A C G T A G T C T A C G C G A T A C T G C T A G A C T G C G T A C T G A G T C A C T G A

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:2
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CAGCCTTGAGAAT
TGACCTTGAN---
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T
G C A T C T A G C T G A T G A C G A T C A G C T C A G T A T C G C T G A T G C A A C G T A C G T A C G T

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:3
Score:0.51
Offset:0
Orientation:reverse strand
Alignment:CAGCCTTGAGAAT
TGACCTTGAV---
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T
G C A T C T A G C T G A G A T C G T A C G A C T G A C T A T C G C T G A T G C A A C G T A C G T A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:4
Score:0.50
Offset:4
Orientation:reverse strand
Alignment:CAGCCTTGAGAAT--
----CTTGAGTGGCT
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T A C G T A C G T
A C G T A C G T A C G T A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

POL010.1_DCE_S_III/Jaspar

Match Rank:5
Score:0.49
Offset:0
Orientation:forward strand
Alignment:CAGCCTTGAGAAT
CAGCC--------
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T
T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:6
Score:0.49
Offset:4
Orientation:reverse strand
Alignment:CAGCCTTGAGAAT-
----CTYRAGTGSY
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T A C G T
A C G T A C G T A C G T A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Nr5a2/MA0505.1/Jaspar

Match Rank:7
Score:0.49
Offset:-2
Orientation:reverse strand
Alignment:--CAGCCTTGAGAAT
GCTGACCTTGAACTN
 A C G T A C G T G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T
T A C G T G A C G C A T T C A G C T G A A G T C A G T C A G C T C A G T A T C G C T G A T C G A G A T C G A C T A G C T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:8
Score:0.48
Offset:-1
Orientation:reverse strand
Alignment:-CAGCCTTGAGAAT
BCAGACWA------
 A C G T G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T
A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

PB0139.1_Irf5_2/Jaspar

Match Rank:9
Score:0.48
Offset:1
Orientation:forward strand
Alignment:CAGCCTTGAGAAT---
-TTGACCGAGAATTCC
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T A C G T A C G T A C G T
A C G T A G C T G C A T C T A G C G T A G A C T G T A C C T A G C T G A A T C G C G T A C T G A G A C T G A C T A G T C T A G C

Sox17/MA0078.1/Jaspar

Match Rank:10
Score:0.47
Offset:7
Orientation:reverse strand
Alignment:CAGCCTTGAGAAT---
-------GACAATGNN
 G T A C C G T A C T A G A T G C A T G C A C G T C G A T A C T G C G T A A C T G C T G A C G T A A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G G T C A A G T C C G T A C T G A C G A T C T A G C G T A C T A G