Information for 11-CGAGGTTAAA (Motif 15)

A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A
Reverse Opposite:
A G C T A C G T C G A T C T G A G T C A A G T C A G T C A G C T A G T C A C T G
p-value:1e-9
log p-value:-2.279e+01
Information Content per bp:1.902
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif1.77%
Number of Background Sequences with motif96.1
Percentage of Background Sequences with motif0.20%
Average Position of motif in Targets47.6 +/- 31.5bp
Average Position of motif in Background51.5 +/- 33.8bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:1
Score:0.64
Offset:0
Orientation:forward strand
Alignment:CGAGGTTAAA
TRAGGTCA--
 A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.63
Offset:0
Orientation:forward strand
Alignment:CGAGGTTAAA
AGRGGTCA--
 A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A
T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.62
Offset:-1
Orientation:reverse strand
Alignment:-CGAGGTTAAA
TCAAGGTCAN-
 A C G T A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T

ESRRB/MA0141.3/Jaspar

Match Rank:4
Score:0.62
Offset:-1
Orientation:forward strand
Alignment:-CGAGGTTAAA
TCAAGGTCATA
 A C G T A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A
G A C T T A G C G C T A T C G A T C A G A T C G A G C T G A T C C T G A G C A T G C T A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.61
Offset:-4
Orientation:forward strand
Alignment:----CGAGGTTAAA---
CTCCAGGGGTCAATTGA
 A C G T A C G T A C G T A C G T A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

RORA/MA0071.1/Jaspar

Match Rank:6
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--CGAGGTTAAA
ATCAAGGTCA--
 A C G T A C G T A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A
C G T A G C A T T G A C C G T A C T G A A C T G A C T G A C G T A G T C C G T A A C G T A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:7
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CGAGGTTAAA
TCAAGGTCAT-
 A C G T A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGAGGTTAAA-----
-GGGGTCAAAGGTCA
 A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:9
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGAGGTTAAA-----
-GAGGTCAAAGGTCA
 A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

RXRG/MA0856.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGAGGTTAAA-----
-GGGGTCAAAGGTCA
 A G T C A C T G C T G A A C T G A C T G C A G T G A C T G C T A C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A