Information for 14-AATRSCATTW (Motif 18)

C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A
Reverse Opposite:
C G A T T G C A G T C A C G A T A T C G A T G C A G T C C T G A A C G T A C G T
p-value:1e-3
log p-value:-7.943e+00
Information Content per bp:1.721
Number of Target Sequences with motif10.0
Percentage of Target Sequences with motif1.07%
Number of Background Sequences with motif125.0
Percentage of Background Sequences with motif0.28%
Average Position of motif in Targets53.8 +/- 30.4bp
Average Position of motif in Background49.5 +/- 35.2bp
Strand Bias (log2 ratio + to - strand density)-2.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Prop1(Homeobox)/GHFT1-PROP1.biotin-ChIP-Seq(GSE77302)/Homer

Match Rank:1
Score:0.76
Offset:-2
Orientation:forward strand
Alignment:--AATRSCATTW
NTAATBNAATTA
 A C G T A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A
G T A C G C A T C T G A C G T A G A C T A G C T C A T G T G C A C T G A A C G T G A C T C G T A

Phox2a(Homeobox)/Neuron-Phox2a-ChIP-Seq(GSE31456)/Homer

Match Rank:2
Score:0.70
Offset:-1
Orientation:reverse strand
Alignment:-AATRSCATTW-
TAATYNRATTAR
 A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A A C G T
G C A T C G T A C G T A G A C T A G C T G C A T T C G A T C G A A C G T G A C T C G T A C T A G

PB0169.1_Sox15_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---AATRSCATTW--
TNGAATTTCATTNAN
 A C G T A C G T A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A A C G T A C G T
A G C T A T G C C T A G C T G A G T C A G A C T C A G T G C A T T G A C C T G A C A G T G A C T A G T C T G C A T G C A

Pax7(Paired,Homeobox),long/Myoblast-Pax7-ChIP-Seq(GSE25064)/Homer

Match Rank:4
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATRSCATTW
GTAATCDGATTA
 A C G T A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A
C A T G C G A T T C G A C T G A G C A T A G T C C A T G T C A G C T G A A C G T G A C T C G T A

Phox2b/MA0681.1/Jaspar

Match Rank:5
Score:0.65
Offset:-1
Orientation:forward strand
Alignment:-AATRSCATTW
TAATTTAATTA
 A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A
G C A T C T G A T C G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

PHOX2A/MA0713.1/Jaspar

Match Rank:6
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AATRSCATTW
TAATTTAATTA
 A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A
G C A T C T G A C T G A G A C T A G C T G A C T T C G A T C G A A G C T G C A T C G T A

Sox1/MA0870.1/Jaspar

Match Rank:7
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AATRSCATTW--
AACAATAACATTGTT
 A C G T A C G T A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A A C G T A C G T
T G C A G C T A A G T C G T C A G T C A C G A T C G T A T C G A A T G C C G T A A C G T A G C T A C T G G A C T A G C T

PB0135.1_Hoxa3_2/Jaspar

Match Rank:8
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AATRSCATTW---
AAAAACCATTAAGG
 A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A A C G T A C G T A C G T
T C G A G T C A C T G A G C T A C G T A T G A C A G T C T G C A C G A T G C A T C G T A C T G A A T C G T C A G

Barx1(Homeobox)/Stomach-Barx1.3xFlag-ChIP-Seq(GSE69483)/Homer

Match Rank:9
Score:0.61
Offset:1
Orientation:forward strand
Alignment:AATRSCATTW-
-AAACMATTAN
 C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A A C G T
A C G T T C G A C T G A C T G A A T G C G T A C G T C A A G C T A G C T C G T A T C A G

PROP1/MA0715.1/Jaspar

Match Rank:10
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AATRSCATTW
TAATTTAATTA
 A C G T C G T A G T C A G A C T T C A G A T C G A T G C G C T A A C G T A C G T C G T A
G C A T C G T A C T G A G C A T G A C T C G A T G T C A C T G A C G A T G A C T C G T A