Information for 7-TGGGACTGGCAGC (Motif 11)

C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C
Reverse Opposite:
A C T G T A G C A C G T A C T G A T G C A G T C C G T A A C T G A C G T A G T C G A T C A G T C C G T A
p-value:1e-11
log p-value:-2.605e+01
Information Content per bp:1.880
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif8.5
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets40.1 +/- 28.7bp
Average Position of motif in Background53.8 +/- 19.3bp
Strand Bias (log2 ratio + to - strand density)-0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:1
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:TGGGACTGGCAGC
-BTGABTGACAGS
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C
A C G T A C G T C G A T A C T G C G T A A C G T A C G T A C T G C T G A A G T C C T G A T A C G A T G C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:TGGGACTGGCAGC
-NTGATTGACAGN
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C
A C G T A C G T C G A T A T C G C G T A A C G T C A G T A C T G C T G A A G T C C T G A A T C G A T C G

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:3
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:TGGGACTGGCAGC-
--TGAGTGACAGSC
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C A C G T
A C G T A C G T C G A T A T C G T C G A A C T G C G A T A T C G C T G A A G T C C G T A A T C G T A C G G A T C

Meis1(Homeobox)/MastCells-Meis1-ChIP-Seq(GSE48085)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:TGGGACTGGCAGC-
----VBTGWCAGCB
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C A C G T
A C G T A C G T A C G T A C G T T C A G A T G C A C G T A C T G C G T A A G T C C G T A A T C G A T G C A G T C

Klf4(Zf)/mES-Klf4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.58
Offset:0
Orientation:reverse strand
Alignment:TGGGACTGGCAGC
TGGGTGTGGC---
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C
C G A T A C T G A C T G A C T G A G C T A C T G A C G T C T A G C A T G G A T C A C G T A C G T A C G T

PH0169.1_Tgif1/Jaspar

Match Rank:6
Score:0.57
Offset:1
Orientation:forward strand
Alignment:TGGGACTGGCAGC-----
-GATATTGACAGCTGCGT
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C A C G T A C G T A C G T A C G T A C G T
A C G T C A G T C T G A A C G T C G T A C G A T C G A T A C T G C G T A A G T C C T G A C T A G A T G C A C G T T A C G T A G C A C T G C G A T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:7
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:TGGGACTGGCAGC-
--TGTCTGDCACCT
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C A C G T
A C G T A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

NF1-halfsite(CTF)/LNCaP-NF1-ChIP-Seq(Unpublished)/Homer

Match Rank:8
Score:0.56
Offset:5
Orientation:forward strand
Alignment:TGGGACTGGCAGC
-----TTGCCAAG
 C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C
A C G T A C G T A C G T A C G T A C G T A G C T A C G T A C T G A T G C A G T C C G T A C T G A T A C G

KLF6(Zf)/PDAC-KLF6-ChIP-Seq(GSE64557)/Homer

Match Rank:9
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGGACTGGCAGC
MKGGGYGTGGCC--
 A C G T C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C
G T A C C A G T A C T G A C T G A C T G G A T C A C T G A C G T A C T G A C T G A G T C G A T C A C G T A C G T

EKLF(Zf)/Erythrocyte-Klf1-ChIP-Seq(GSE20478)/Homer

Match Rank:10
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-TGGGACTGGCAGC
NTGGGTGTGGCC--
 A C G T C G A T A C T G C T A G C T A G C G T A A G T C A C G T A C T G A T C G A G T C G T C A A C T G A G T C
T G A C C G A T A C T G A C T G A C T G G A C T A C T G A C G T A C T G A C T G G A T C G A T C A C G T A C G T