Information for 9-AAWGARWGCATAA (Motif 12)

G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A
Reverse Opposite:
A C G T A C G T C G T A A C G T A C T G A G T C C G T A A G C T A C G T A G T C G C A T C G A T C A G T
p-value:1e-7
log p-value:-1.816e+01
Information Content per bp:1.884
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.83%
Number of Background Sequences with motif5.2
Percentage of Background Sequences with motif0.02%
Average Position of motif in Targets37.3 +/- 27.8bp
Average Position of motif in Background50.0 +/- 6.7bp
Strand Bias (log2 ratio + to - strand density)2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0148.1_Pou3f3/Jaspar

Match Rank:1
Score:0.72
Offset:0
Orientation:forward strand
Alignment:AAWGARWGCATAA----
AAAATATGCATAATAAA
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:2
Score:0.59
Offset:5
Orientation:forward strand
Alignment:AAWGARWGCATAA--
-----ATGMATATDC
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C

CEBPA/MA0102.3/Jaspar

Match Rank:3
Score:0.59
Offset:4
Orientation:forward strand
Alignment:AAWGARWGCATAA--
----ATTGCACAATA
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T T C G A A C G T A C G T C A T G A G T C T G C A G A T C G T C A C G T A A G C T G T C A

PB0028.1_Hbp1_1/Jaspar

Match Rank:4
Score:0.58
Offset:-2
Orientation:forward strand
Alignment:--AAWGARWGCATAA-
ACTATGAATGAATGAT
 A C G T A C G T G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T
G C T A G T A C C G A T G C T A G C A T T A C G C G T A C G T A C G A T A C T G C T G A T C G A G A C T C A T G C T G A A G C T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:AAWGARWGCATAA--
-----ATGAATATTC
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C

PB0145.1_Mafb_2/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:AAWGARWGCATAA----
--CAATTGCAAAAATAT
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T G T A C T C G A C G T A A C G T A C G T A C T G G A T C C T G A C G T A G C T A C G T A C G T A G C A T C T G A G C A T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:AAWGARWGCATAA----
-----ATGCATAATTCA
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A

MF0006.1_bZIP_cEBP-like_subclass/Jaspar

Match Rank:8
Score:0.56
Offset:4
Orientation:forward strand
Alignment:AAWGARWGCATAA
----ATTGCATAA
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A
A C G T A C G T A C G T A C G T T C G A G A C T A C G T C T A G G A T C T C G A G A C T G T C A G C T A

PB0146.1_Mafk_2/Jaspar

Match Rank:9
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--AAWGARWGCATAA
GAAAAAATTGCAAGG
 A C G T A C G T G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A
T C A G G T C A T C G A C T G A C T G A G C T A G C T A C A G T A G C T C A T G A G T C T G C A G T C A A T C G T C A G

HLF(bZIP)/HSC-HLF.Flag-ChIP-Seq(GSE69817)/Homer

Match Rank:10
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:AAWGARWGCATAA-
----VTTRCATAAY
 G C T A C G T A C G A T A C T G C G T A C T G A C G A T A C T G A G T C C G T A A C G T C G T A C G T A A C G T
A C G T A C G T A C G T A C G T T C A G G A C T A C G T C T G A G A T C T C G A G A C T G T C A C T G A A G T C