Information for 19-CTGTGAGTGT (Motif 28)

A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T
Reverse Opposite:
C G T A A G T C C G T A A G T C A C G T A G T C C G T A G T A C C G T A A C T G
p-value:1e-6
log p-value:-1.560e+01
Information Content per bp:1.926
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.91%
Number of Background Sequences with motif28.9
Percentage of Background Sequences with motif0.07%
Average Position of motif in Targets48.4 +/- 25.4bp
Average Position of motif in Background39.5 +/- 20.9bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CTGTGAGTGT--
--TTRAGTGSYK
 A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A G C T G A C T C T A G C G T A C A T G C G A T C T A G A T C G G A C T C A G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:2
Score:0.64
Offset:1
Orientation:reverse strand
Alignment:CTGTGAGTGT--
-CTTGAGTGGCT
 A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A T G C G A C T C A G T C T A G C G T A A C T G C G A T A C T G A T C G G A T C G A C T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTGTGAGTGT--
--TTGAGTGSTT
 A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T G C A T A C G T C T A G C G T A C A T G C G A T C T A G A T C G G A C T G A C T

Nkx3.1(Homeobox)/LNCaP-Nkx3.1-ChIP-Seq(GSE28264)/Homer

Match Rank:4
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:CTGTGAGTGT--
--TTAAGTGCTT
 A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C A G T T C G A C G T A A C T G A C G T C T A G A T G C A G C T A G C T

Gfi1b(Zf)/HPC7-Gfi1b-ChIP-Seq(GSE22178)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-CTGTGAGTGT
GCAGTGATTT-
 A C G T A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T
C T A G A G T C G C T A A T C G C G A T A C T G T C G A A C G T A C G T A C G T A C G T

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.60
Offset:3
Orientation:forward strand
Alignment:CTGTGAGTGT
---TGCGTG-
 A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T
A C G T A C G T A C G T G A C T A C T G A G T C A C T G A C G T A C T G A C G T

Gfi1b/MA0483.1/Jaspar

Match Rank:7
Score:0.60
Offset:-2
Orientation:reverse strand
Alignment:--CTGTGAGTGT
TGCTGTGATTT-
 A C G T A C G T A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T
C G A T C T A G G A T C G C A T A T C G C G A T A C T G T C G A A G C T A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CTGTGAGTGT
GCTGTG-----
 A C G T A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T
T A C G T A G C C A G T A T C G G A C T A T C G A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:9
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CTGTGAGTGT-
-CTYRAGTGSY
 A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T A C G T
A C G T A T G C G C A T A G C T C T A G C G T A A C T G C G A T C T A G A T G C G A T C

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:CTGTGAGTGT--
--TTGCGTGCVA
 A G T C C G A T A C T G A C G T A C T G G T C A A C T G A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T C A G T A C T G A G T C T C A G C G A T C A T G G T A C T A G C C G T A