Information for 4-CACACAGCCA (Motif 14)

G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A
Reverse Opposite:
C G A T A C T G T C A G A G T C A C G T A C T G A G C T C T A G A C G T A C T G
p-value:1e-7
log p-value:-1.636e+01
Information Content per bp:1.837
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.97%
Number of Background Sequences with motif267.4
Percentage of Background Sequences with motif0.54%
Average Position of motif in Targets43.4 +/- 30.5bp
Average Position of motif in Background49.7 +/- 29.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL009.1_DCE_S_II/Jaspar

Match Rank:1
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:CACACAGCCA
--CACAGN--
 G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A
A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:2
Score:0.64
Offset:3
Orientation:reverse strand
Alignment:CACACAGCCA-
---BCAGACWA
 G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A A C G T
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.64
Offset:-5
Orientation:forward strand
Alignment:-----CACACAGCCA-
AGCGGCACACACGCAA
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A A C G T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

Tlx?(NR)/NPC-H3K4me1-ChIP-Seq(GSE16256)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---CACACAGCCA-
TGGCAGNCTGCCAG
 A C G T A C G T A C G T G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A A C G T
C A G T A C T G A T C G T G A C G C T A A C T G T A G C G T A C C G A T A C T G T A G C G T A C G C T A T C A G

Pax8(Paired,Homeobox)/Thyroid-Pax8-ChIP-Seq(GSE26938)/Homer

Match Rank:5
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACACAGCCA----
SCAGYCADGCATGAC
 A C G T G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A A C G T A C G T A C G T A C G T
A T C G G T A C C G T A A T C G A G C T A T G C C G T A C T A G A T C G A G T C T C G A C A G T T C A G T C G A T G A C

Ahr::Arnt/MA0006.1/Jaspar

Match Rank:6
Score:0.59
Offset:0
Orientation:reverse strand
Alignment:CACACAGCCA
CACGCA----
 G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A
A G T C C G T A G T A C C T A G G T A C C T G A A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.59
Offset:4
Orientation:forward strand
Alignment:CACACAGCCA
----CAGCC-
 G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A
A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T

KLF10(Zf)/HEK293-KLF10.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-CACACAGCCA-
GGACACACCCCC
 A C G T G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A A C G T
T C A G T A C G G T C A A G T C G T C A A G T C C T G A A G T C G T A C G A T C G T A C A G T C

NFIC::TLX1/MA0119.1/Jaspar

Match Rank:9
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACACAGCCA-
TGGCACCATGCCAA
 A C G T A C G T A C G T G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A A C G T
A C G T A C T G A C T G A G T C G C T A T A G C A T G C C T G A G C A T A C T G A G T C A G T C C G T A C G T A

PB0208.1_Zscan4_2/Jaspar

Match Rank:10
Score:0.58
Offset:-5
Orientation:forward strand
Alignment:-----CACACAGCCA-
CGAAGCACACAAAATA
 A C G T A C G T A C G T A C G T A C G T G T A C C G T A G A T C T C G A G T A C C G T A C T A G A G T C A G T C C G T A A C G T
G T A C T A C G G C T A T C G A C T A G T G A C C G T A G T A C C T G A G A T C G C T A G T C A G T C A G C T A G C A T T C G A