Information for 5-GAAAGRCCACATT (Motif 7)

A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
Reverse Opposite:
C T G A G C T A A C G T A C T G C G A T A C T G A C T G G A T C G T A C C G A T A G C T C G A T A T G C
p-value:1e-13
log p-value:-3.115e+01
Information Content per bp:1.739
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.52%
Number of Background Sequences with motif35.1
Percentage of Background Sequences with motif0.08%
Average Position of motif in Targets56.9 +/- 29.8bp
Average Position of motif in Background45.5 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NR4A2/MA0160.1/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:GAAAGRCCACATT
--AAGGTCAC---
 A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
A C G T A C G T C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T A C G T

PB0134.1_Hnf4a_2/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAAAGRCCACATT
GGCAAAAGTCCAATAA
 A C G T A C G T A C G T A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PB0053.1_Rara_1/Jaspar

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---GAAAGRCCACATT
TCTCAAAGGTCACCTG
 A C G T A C G T A C G T A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
C A G T G T A C A G C T G T A C G C T A C T G A T C G A A C T G A C T G A C G T A G T C C T G A G A T C T A G C G A C T C A T G

RUNX2(Runt)/PCa-RUNX2-ChIP-Seq(GSE33889)/Homer

Match Rank:4
Score:0.59
Offset:2
Orientation:forward strand
Alignment:GAAAGRCCACATT-
--NWAACCACADNN
 A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T A C G T
A C G T A C G T T G A C G C T A T C G A T G C A A G T C A G T C C G T A A G T C C G T A C T G A G C T A G T A C

Nur77(NR)/K562-NR4A1-ChIP-Seq(GSE31363)/Homer

Match Rank:5
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---GAAAGRCCACATT
ANGNAAAGGTCA----
 A C G T A C G T A C G T A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
C T G A A C T G C A T G C A G T C G T A C G T A C G T A A C T G A C T G A C G T A G T C C G T A A C G T A C G T A C G T A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:6
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------GAAAGRCCACATT
AGAGTCCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:GAAAGRCCACATT
CAAAGGTCAG---
 A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G A C G T A C G T A C G T

REL/MA0101.1/Jaspar

Match Rank:8
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAAAGRCCACATT
GGAAANCCCC----
 A C G T A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
A C T G C T A G C G T A C G T A C G T A A C G T G A T C G A T C T A G C T A G C A C G T A C G T A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.55
Offset:-7
Orientation:forward strand
Alignment:-------GAAAGRCCACATT
CANAGNNCAAAGTCCA----
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T A C G T A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:10
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---GAAAGRCCACATT
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A T C G C G T A C T G A C G T A C A T G C T A G G T A C A G T C C G T A T G A C G T C A C G A T A G C T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G