Information for 6-CCGCCGTAAA (Motif 12)

A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A
Reverse Opposite:
A C G T G C A T A C G T T C G A A G T C T A C G A C T G G T A C A T C G A T C G
p-value:1e-9
log p-value:-2.149e+01
Information Content per bp:1.751
Number of Target Sequences with motif17.0
Percentage of Target Sequences with motif1.85%
Number of Background Sequences with motif119.0
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets52.9 +/- 26.1bp
Average Position of motif in Background53.9 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)-0.5
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

YY2/MA0748.1/Jaspar

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCGCCGTAAA
GTCCGCCATTA-
 A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A
C T A G C G A T G A T C A T G C T A C G T G A C A G T C C G T A C G A T G A C T C G T A A C G T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:2
Score:0.66
Offset:1
Orientation:forward strand
Alignment:CCGCCGTAAA---
-NGYCATAAAWCH
 A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A A C G T A C G T A C G T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A

PH0158.1_Rhox11_2/Jaspar

Match Rank:3
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCGCCGTAAA----
AGGACGCTGTAAAGGGA
 A C G T A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T C A G C A T G G T C A G A T C C T A G T A G C C A G T C T A G G A C T G C T A C G T A G C T A C T A G T A C G T C A G G C T A

Rhox11/MA0629.1/Jaspar

Match Rank:4
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCGCCGTAAA----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

PH0157.1_Rhox11_1/Jaspar

Match Rank:5
Score:0.62
Offset:-3
Orientation:forward strand
Alignment:---CCGCCGTAAA----
AAGACGCTGTAAAGCGA
 A C G T A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A A C G T A C G T A C G T A C G T
C G T A T G C A C A T G T G C A G A T C C T A G T A G C C A G T C T A G G A C T C G T A G C T A G C T A C T A G T A G C T C A G G C T A

E2F4(E2F)/K562-E2F4-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.61
Offset:-5
Orientation:reverse strand
Alignment:-----CCGCCGTAAA
DTTTCCCGCC-----
 A C G T A C G T A C G T A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A
C T G A G C A T G A C T C A G T A T G C A T G C A T G C A C T G A T G C A T G C A C G T A C G T A C G T A C G T A C G T

E2F4/MA0470.1/Jaspar

Match Rank:7
Score:0.60
Offset:-5
Orientation:reverse strand
Alignment:-----CCGCCGTAAA
NNTTCCCGCCC----
 A C G T A C G T A C G T A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A
A G T C A G T C A G C T A G C T A T G C A T G C A G T C A C T G A T G C A T G C T G A C A C G T A C G T A C G T A C G T

E2F3(E2F)/MEF-E2F3-ChIP-Seq(GSE71376)/Homer

Match Rank:8
Score:0.60
Offset:-4
Orientation:reverse strand
Alignment:----CCGCCGTAAA
TTTCCCGCCMAV--
 A C G T A C G T A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A
C G A T G A C T A C G T A T G C A T G C A G T C A C T G A T G C T A G C G T A C T G C A T G A C A C G T A C G T

PH0077.1_Hoxd12/Jaspar

Match Rank:9
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CCGCCGTAAA-----
CAAGGTCGTAAAATCTT
 A C G T A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T
G A C T G C T A C T G A T A C G T C A G A G C T G T A C C T A G A C G T C G T A C G T A C G T A G C T A G A C T G A T C G C A T C A G T

PH0056.1_Hoxa9/Jaspar

Match Rank:10
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-CCGCCGTAAA------
ACGGCCATAAAATTAAT
 A C G T A T G C T A G C A C T G A G T C A T G C T C A G A G C T T G C A C G T A C G T A A C G T A C G T A C G T A C G T A C G T A C G T
C T G A T G A C C T A G A T C G G A T C G T A C C T G A C G A T G C T A C G T A C G T A C G T A G C A T C A G T C G T A C T G A C G A T