Information for 3-CCCGTGCMCCCTGCTG (Motif 4)

A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G
Reverse Opposite:
A G T C C G T A C T A G A G T C C G T A A C T G A C T G A T C G A C G T A T C G A T G C C G T A A G T C A C T G A C T G A T C G
p-value:1e-10
log p-value:-2.498e+01
Information Content per bp:1.848
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif1.26%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets63.1 +/- 22.8bp
Average Position of motif in Background83.3 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.40
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:1
Score:0.72
Offset:6
Orientation:reverse strand
Alignment:CCCGTGCMCCCTGCTG--
------CCCCCTGCTGTG
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G A T C G A T C G A T C G T A C G T A C G C A T C T A G A G T C G C A T A C T G C G A T A C T G

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:2
Score:0.71
Offset:4
Orientation:forward strand
Alignment:CCCGTGCMCCCTGCTG---
----GGCCYCCTGCTGDGH
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T C A T G T A C G T A G C G A T C G A T C A T G C G T A C G A C T T C A G A T G C C G A T A T C G C A G T A C T G G T A C

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--CCCGTGCMCCCTGCTG--
CNNBRGCGCCCCCTGSTGGC
 A C G T A C G T A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T
T A G C A G T C T G A C A G T C C T A G A T C G A G T C C A T G T G A C A G T C G T A C A G T C A G T C G C A T C T A G A T C G G C A T A C T G A T C G G A T C

CTCF/MA0139.1/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:reverse strand
Alignment:CCCGTGCMCCCTGCTG----
-TAGCGCCCCCTGGTGGCCA
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T
A C G T A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCCGTGCMCCCTGCTG----
ANAGTGCCACCTGGTGGCCA
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

Zic(Zf)/Cerebellum-ZIC1.2-ChIP-Seq(GSE60731)/Homer

Match Rank:6
Score:0.63
Offset:9
Orientation:forward strand
Alignment:CCCGTGCMCCCTGCTG---
---------CCTGCTGAGH
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C G T A C A G C T C T A G A G T C C G A T A C T G C G T A A C T G G T C A

ZIC1/MA0696.1/Jaspar

Match Rank:7
Score:0.63
Offset:4
Orientation:forward strand
Alignment:CCCGTGCMCCCTGCTG--
----GACCCCCCGCTGTG
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C A G T C G T A C G A T C T C A G A G T C A C G T T C A G G A C T A C T G

ZIC4/MA0751.1/Jaspar

Match Rank:8
Score:0.62
Offset:4
Orientation:forward strand
Alignment:CCCGTGCMCCCTGCTG---
----GACCCCCCGCTGTGC
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C T G T C G A G T A C G T A C G T A C G T A C G T A C G A T C C T A G A G T C C A G T C T A G G A C T A C T G G T A C

PB0206.1_Zic2_2/Jaspar

Match Rank:9
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CCCGTGCMCCCTGCTG-----
------TCNCCTGCTGNGNNN
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C A C G T T G A C T G A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G A C T C A T G C T A G

PB0205.1_Zic1_2/Jaspar

Match Rank:10
Score:0.62
Offset:6
Orientation:reverse strand
Alignment:CCCGTGCMCCCTGCTG-----
------TNTCCTGCTGTGNNG
 A T G C A G T C T A G C A C T G A C G T A T C G A T G C G T A C A T G C A G T C A G T C A C G T A C T G A G T C A C G T A C T G A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T G C A T A G T C C A G T T G A C G T A C G A C T T C A G A G T C C G A T C T A G A G C T A C T G G C A T C A T G T C A G