Information for 7-NNNAATAGTGNNN (Motif 20)

A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
Reverse Opposite:
G A T C C G T A T A G C A G T C C T G A G T A C C A G T C G T A C A G T C G A T T A G C A G T C T A C G
p-value:1e-8
log p-value:-1.880e+01
Information Content per bp:1.345
Number of Target Sequences with motif662.0
Percentage of Target Sequences with motif70.35%
Number of Background Sequences with motif27658.0
Percentage of Background Sequences with motif61.44%
Average Position of motif in Targets50.4 +/- 26.1bp
Average Position of motif in Background50.3 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-0.0
Multiplicity (# of sites on avg that occur together)1.44
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:1
Score:0.69
Offset:-2
Orientation:forward strand
Alignment:--NNNAATAGTGNNN
CCAAAAATAG-----
 A C G T A C G T A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:2
Score:0.69
Offset:1
Orientation:forward strand
Alignment:NNNAATAGTGNNN--
-CTAATATTGCTAAA
 A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

PB0002.1_Arid5a_1/Jaspar

Match Rank:3
Score:0.69
Offset:1
Orientation:forward strand
Alignment:NNNAATAGTGNNN--
-CTAATATTGCTAAA
 A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G A C G T A C G T
A C G T T A G C G A C T C T G A C G T A C G A T C G T A C G A T A G C T C T A G T G A C C G A T C T G A C G T A G C T A

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:4
Score:0.61
Offset:-3
Orientation:reverse strand
Alignment:---NNNAATAGTGNNN
KCCAAAAATAGC----
 A C G T A C G T A C G T A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.61
Offset:-3
Orientation:forward strand
Alignment:---NNNAATAGTGNNN
DCYAAAAATAGM----
 A C G T A C G T A C G T A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T A C G T

PB0128.1_Gcm1_2/Jaspar

Match Rank:6
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-NNNAATAGTGNNN---
TGCGCATAGGGGAGGAG
 A C G T A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G A C G T A C G T A C G T
C G A T C A T G A T G C T A C G G T A C T C G A A G C T T C G A C A T G A C T G A C T G A C T G T C G A A T C G T C A G G T C A A C T G

GSC/MA0648.1/Jaspar

Match Rank:7
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-NNNAATAGTGNNN
NNGGATTAGN----
 A C G T A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
C T A G T A C G T C A G T C A G T G C A A C G T G A C T C T G A C T A G A T G C A C G T A C G T A C G T A C G T

GSC2/MA0891.1/Jaspar

Match Rank:8
Score:0.59
Offset:-1
Orientation:reverse strand
Alignment:-NNNAATAGTGNNN
GNGGATTAGN----
 A C G T A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
C T A G T A G C T C A G C A T G T G C A C G A T C G A T C G T A C T A G A C T G A C G T A C G T A C G T A C G T

HOXA5/MA0158.1/Jaspar

Match Rank:9
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:NNNAATAGTGNNN
--AATTAGTG---
 A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
A C G T A C G T T G C A C G T A A G C T C G A T G C T A T A C G G A C T A C T G A C G T A C G T A C G T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:10
Score:0.58
Offset:-3
Orientation:reverse strand
Alignment:---NNNAATAGTGNNN
GCTAAAAATAGC----
 A C G T A C G T A C G T A T G C T C A G A T C G G C T A G T C A G C A T G T C A A C T G G A C T T C A G A T C G C G A T C T A G
A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T A C G T A C G T A C G T