Information for 3-ATGAAGADCGVAC (Motif 6)

C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
Reverse Opposite:
A C T G A C G T A C T G A G T C A T C G G A C T A C G T A G T C A C G T A C G T A G T C C G T A C G A T
p-value:1e-12
log p-value:-2.835e+01
Information Content per bp:1.847
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif0.92%
Number of Background Sequences with motif2.1
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets42.7 +/- 20.1bp
Average Position of motif in Background35.0 +/- 23.2bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATGAAGADCGVAC
ATGAATATTC---
 C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

PB0178.1_Sox8_2/Jaspar

Match Rank:2
Score:0.54
Offset:-6
Orientation:reverse strand
Alignment:------ATGAAGADCGVAC
NNTNTCATGAATGT-----
 A C G T A C G T A C G T A C G T A C G T A C G T C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
A T G C T A C G C A G T A C T G C G A T G A T C T G C A A G C T C T A G C G T A T C G A C G A T C T A G G A C T A C G T A C G T A C G T A C G T A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:3
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATGAAGADCGVAC
ATATGCAAATNNN--
 A C G T A C G T C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:4
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ATGAAGADCGVAC
TATGCAAAT-----
 A C G T C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

Oct4(POU,Homeobox)/mES-Oct4-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ATGAAGADCGVAC
TTATGCAAAT-----
 A C G T A C G T C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
C G A T G C A T C T G A A C G T A C T G A G T C C G T A C T G A C G T A C G A T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.53
Offset:1
Orientation:reverse strand
Alignment:ATGAAGADCGVAC
-NGAAGC------
 C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T

MAFG::NFE2L1/MA0089.1/Jaspar

Match Rank:7
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-ATGAAGADCGVAC
CATGAC--------
 A C G T C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
T A G C T C G A A C G T C A T G C G T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:8
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ATGAAGADCGVAC
ATGMATATDC---
 C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:9
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-ATGAAGADCGVAC
TATGCWAATBAV--
 A C G T C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:ATGAAGADCGVAC
ATGCATAATTCA-
 C G T A A C G T A C T G C G T A C G T A C T A G C G T A C G T A A T G C A C T G T A G C C G T A A G T C
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T