Information for 3-AAGGGCAAGA (Motif 16)

G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
Reverse Opposite:
A G C T A G T C A G C T C G A T C A T G G A T C T A G C A G T C G C A T C G A T
p-value:1e-10
log p-value:-2.350e+01
Information Content per bp:1.650
Number of Target Sequences with motif75.0
Percentage of Target Sequences with motif11.49%
Number of Background Sequences with motif2467.3
Percentage of Background Sequences with motif5.06%
Average Position of motif in Targets45.6 +/- 27.2bp
Average Position of motif in Background48.5 +/- 26.7bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.04
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SF1(NR)/H295R-Nr5a1-ChIP-Seq(GSE44220)/Homer

Match Rank:1
Score:0.72
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCAAGA
CAAGGHCANV-
 A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
T G A C C G T A C T G A A C T G A C T G G A C T G A T C T G C A G T A C T A C G A C G T

Esrrg/MA0643.1/Jaspar

Match Rank:2
Score:0.67
Offset:-2
Orientation:forward strand
Alignment:--AAGGGCAAGA
TCAAGGTCAT--
 A C G T A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
G A C T T A G C C T G A T C G A C A T G A T C G C A G T A G T C C T G A G C A T A C G T A C G T

Esrrb(NR)/mES-Esrrb-ChIP-Seq(GSE11431)/Homer

Match Rank:3
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AAGGGCAAGA
TCAAGGTCAN--
 A C G T A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
A G C T T A G C C T G A T C G A A T C G C A T G C A G T A T G C T C G A G T A C A C G T A C G T

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:4
Score:0.66
Offset:1
Orientation:forward strand
Alignment:AAGGGCAAGA--
-AAGGCAAGTGT
 G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A A C G T A C G T
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T

NR4A2/MA0160.1/Jaspar

Match Rank:5
Score:0.65
Offset:0
Orientation:forward strand
Alignment:AAGGGCAAGA
AAGGTCAC--
 G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
C T G A C T G A A C T G C T A G G A C T A G T C C G T A T G A C A C G T A C G T

THAP1/MA0597.1/Jaspar

Match Rank:6
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AAGGGCAAGA
TNNGGGCAG--
 A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
C A G T T C A G G T A C C A T G C A T G C T A G G T A C C T G A T C A G A C G T A C G T

PB0049.1_Nr2f2_1/Jaspar

Match Rank:7
Score:0.65
Offset:-5
Orientation:forward strand
Alignment:-----AAGGGCAAGA-
TCTCAAAGGTCACGAG
 A C G T A C G T A C G T A C G T A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A A C G T
C A G T G T A C A C G T G T A C C G T A C T G A C T G A A C T G A C T G A C G T A G T C C T G A G T A C T A C G C G T A A C T G

Nr5a2(NR)/Pancreas-LRH1-ChIP-Seq(GSE34295)/Homer

Match Rank:8
Score:0.65
Offset:-3
Orientation:forward strand
Alignment:---AAGGGCAAGA
BTCAAGGTCA---
 A C G T A C G T A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
A C G T G A C T T A G C C G T A C T G A C A T G C T A G G A C T G A T C C G T A A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:9
Score:0.64
Offset:-1
Orientation:forward strand
Alignment:-AAGGGCAAGA
TRAGGTCA---
 A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T A C G T

Nr5a2(NR)/mES-Nr5a2-ChIP-Seq(GSE19019)/Homer

Match Rank:10
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---AAGGGCAAGA
NTCAAGGTCA---
 A C G T A C G T A C G T G C T A C G T A C T A G A T C G C T A G G T A C G C T A T C G A T C A G T C G A
A C G T G A C T A T G C G C T A C T G A C T A G A C T G G A C T A G T C C G T A A C G T A C G T A C G T