Information for 10-AATTTGATGGCCT (Motif 23)

C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T
Reverse Opposite:
C G T A C T A G A C T G A G T C A G T C C G T A A C G T A T G C G T C A C G T A C G T A A C G T A C G T
p-value:1e-9
log p-value:-2.124e+01
Information Content per bp:1.875
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.81%
Number of Background Sequences with motif1.7
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets43.2 +/- 30.8bp
Average Position of motif in Background40.2 +/- 15.8bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0056.1_Hoxa9/Jaspar

Match Rank:1
Score:0.75
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGATGGCCT-
ANTAATTTTATGGCCGN
 A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T A C G T
G C T A G A C T G C A T G C T A C G T A G C A T C G A T C G A T C G A T C G T A G A C T C A T G C T A G T A G C G A T C A C T G G A C T

PH0064.1_Hoxb9/Jaspar

Match Rank:2
Score:0.72
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGATGGCCT-
NGANTTTTATGGCTCN
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T A C G T
G A T C C A T G C T G A C G T A G C A T C G A T C G A T C G A T C G T A A G C T C A T G C T A G T A G C A G C T A G T C A G C T

PH0012.1_Cdx1/Jaspar

Match Rank:3
Score:0.71
Offset:-1
Orientation:reverse strand
Alignment:-AATTTGATGGCCT--
NAATTTTATTACCTNN
 A C G T C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T A C G T A C G T
C G A T G T C A T C G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T G A C T G C T A

PH0013.1_Cdx2/Jaspar

Match Rank:4
Score:0.69
Offset:-1
Orientation:reverse strand
Alignment:-AATTTGATGGCCT--
NAATTTTATTACCNNN
 A C G T C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T A C G T A C G T
C T G A G T C A C T G A C G A T C G A T C G A T C G A T C G T A A G C T C A G T C T G A A G T C G A T C A C G T A G C T G C A T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:5
Score:0.67
Offset:2
Orientation:reverse strand
Alignment:AATTTGATGGCCT
--GTTAATGGCC-
 C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T
A C G T A C G T A T C G A G C T C A G T T C G A C T G A C G A T C A T G C T A G A T G C G A T C A C G T

PH0046.1_Hoxa10/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--AATTTGATGGCCT-
TNAATTTTATTACCTN
 A C G T A C G T C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T A C G T
G C A T C A T G G T C A C G T A C G A T C G A T G C A T C G A T C G T A G A C T C A G T C T G A A G T C T G A C C A G T G T C A

CDX2/MA0465.1/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:reverse strand
Alignment:AATTTGATGGCCT
--TTTTATGGCTN
 C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T
A C G T A C G T A G C T A C G T A C G T A C G T C G T A A C G T C A T G C T A G A G T C G A C T A G C T

PH0073.1_Hoxc9/Jaspar

Match Rank:8
Score:0.65
Offset:-1
Orientation:reverse strand
Alignment:-AATTTGATGGCCT--
NNAATTAATGACCNNN
 A C G T C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T A C G T A C G T
T G C A G C A T C T G A C T G A C G A T A C G T C G T A C G T A A G C T A C T G C T G A A G T C G A T C A G C T G T A C A G T C

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---AATTTGATGGCCT-
NTNAATTTTATTGNATT
 A C G T A C G T A C G T C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T A C G T
C G T A G C A T G C T A G C T A C T G A A G C T C G A T C G A T C G A T C T G A G C A T C A G T C T A G A G T C T G C A G A C T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:AATTTGATGGCCT
-NTTTTATGAC--
 C G T A C G T A A C G T A C G T A C G T A T C G C G T A A C G T A C T G C T A G G T A C A G T C C G A T
A C G T C T G A C G A T A C G T A C G T A C G T C G T A A C G T C A T G C T G A A G T C A C G T A C G T