Information for 2-AAATTCTCAT (Motif 18)

G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T
Reverse Opposite:
C G T A C G A T A T C G T C G A T C A G G C T A C G T A C G A T G A C T C G A T
p-value:1e-9
log p-value:-2.294e+01
Information Content per bp:1.683
Number of Target Sequences with motif69.0
Percentage of Target Sequences with motif14.00%
Number of Background Sequences with motif2706.3
Percentage of Background Sequences with motif6.04%
Average Position of motif in Targets47.9 +/- 27.1bp
Average Position of motif in Background49.7 +/- 28.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU3F3/MA0788.1/Jaspar

Match Rank:1
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:AAATTCTCAT---
AAATTAGCATAAT
 G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T A C G T A C G T A C G T
G C T A G C T A C G T A G A C T G C A T C G T A T C A G G T A C T G C A G C A T G C T A G C T A G C A T

POU3F1/MA0786.1/Jaspar

Match Rank:2
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:AAATTCTCAT--
TAATTTGCATAA
 G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T A C G T A C G T
C G A T G T C A G C T A G C A T G C A T G C A T T C A G G T A C C T G A G A C T C G T A G C T A

NFkB-p65-Rel(RHD)/ThioMac-LPS-Expression(GSE23622)/Homer

Match Rank:3
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--AAATTCTCAT
GGAAATTCCC--
 A C G T A C G T G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T
A C T G C A T G G C T A T C G A G C T A A G C T A G C T G T A C A G T C T G A C A C G T A C G T

POU3F2/MA0787.1/Jaspar

Match Rank:4
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:AAATTCTCAT--
TAATTTGCATAA
 G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T A C G T A C G T
C G A T T G C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A A G C T C G T A G C T A

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.63
Offset:-1
Orientation:reverse strand
Alignment:-AAATTCTCAT-
BTVATTWGCATA
 A C G T G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T A C G T
A G T C C A G T T G C A G T C A A C G T A G C T C G A T T C A G G T A C C G T A A C G T C T G A

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:6
Score:0.61
Offset:0
Orientation:reverse strand
Alignment:AAATTCTCAT
GAATATTCAT
 G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T
T C A G G T C A C G T A A G C T C G T A G A C T C A G T A T G C T C G A C G A T

POU2F1/MA0785.1/Jaspar

Match Rank:7
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:AAATTCTCAT---
-AATTTGCATANT
 G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T A C G T A C G T A C G T
A C G T G T C A G C T A G C A T G A C T G C A T T C A G G T A C T C G A G C A T C T G A G C A T C G A T

PB0165.1_Sox11_2/Jaspar

Match Rank:8
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-AAATTCTCAT---
AAAATTGTTATGAA
 A C G T G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T A C G T A C G T A C G T
C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

FOXH1/MA0479.1/Jaspar

Match Rank:9
Score:0.61
Offset:-2
Orientation:forward strand
Alignment:--AAATTCTCAT
TCCAATCCACA-
 A C G T A C G T G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T
A G C T A G T C T A G C C G T A C G T A A C G T G T A C G T A C C G T A A G T C C G T A A C G T

PH0144.1_Pou2f2/Jaspar

Match Rank:10
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--AAATTCTCAT----
TNTAATTTGCATANNN
 A C G T A C G T G C T A C T G A C G T A G C A T C A G T A G T C A G C T A T G C C G T A G C A T A C G T A C G T A C G T A C G T
A C G T G A T C C A G T G T C A G C T A C G A T G C A T C G A T T C A G G T A C C T G A C G A T C G T A G T A C C G T A T C G A