Information for 12-GTGTCTATCA (Motif 30)

A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A
Reverse Opposite:
C G A T T A C G G C T A G A C T C G T A A T C G C G T A A G T C C G T A T G A C
p-value:1e-8
log p-value:-1.843e+01
Information Content per bp:1.842
Number of Target Sequences with motif14.0
Percentage of Target Sequences with motif1.89%
Number of Background Sequences with motif58.7
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets52.9 +/- 31.1bp
Average Position of motif in Background54.7 +/- 32.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:GTGTCTATCA---
-TGTCTGDCACCT
 A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A A C G T A C G T A C G T
A C G T G C A T A C T G C G A T A G T C A C G T T A C G C A T G A G T C C G T A T A G C G A T C G A C T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:2
Score:0.74
Offset:0
Orientation:forward strand
Alignment:GTGTCTATCA---
CTGTCTGTCACCT
 A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A A C G T A C G T A C G T
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:3
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTGTCTATCA-
NCTGTCAATCAN
 A C G T A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A A C G T
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:4
Score:0.70
Offset:-1
Orientation:forward strand
Alignment:-GTGTCTATCA-
SCTGTCAVTCAV
 A C G T A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A A C G T
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:5
Score:0.64
Offset:0
Orientation:forward strand
Alignment:GTGTCTATCA
TWGTCTGV--
 A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A
A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G A C G T A C G T

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:6
Score:0.64
Offset:-2
Orientation:forward strand
Alignment:--GTGTCTATCA
GSCTGTCACTCA
 A C G T A C G T A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A

FOXL1/MA0033.2/Jaspar

Match Rank:7
Score:0.63
Offset:1
Orientation:reverse strand
Alignment:GTGTCTATCA
-TGTTTAC--
 A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A
A C G T C A G T C T A G A C G T C A G T A C G T C T G A G A T C A C G T A C G T

FOXG1/MA0613.1/Jaspar

Match Rank:8
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:GTGTCTATCA
TTGTTTAC--
 A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A
C G A T A C G T A C T G A C G T A C G T A C G T C G T A A G T C A C G T A C G T

Foxf1(Forkhead)/Lung-Foxf1-ChIP-Seq(GSE77951)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:GTGTCTATCA--
NTGTTTAYATWW
 A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A A C G T A C G T
C A G T A C G T C T A G A C G T A C G T A C G T C G T A A G C T T G C A G A C T C G T A C G T A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:10
Score:0.62
Offset:-2
Orientation:forward strand
Alignment:--GTGTCTATCA
VBSYGTCTGG--
 A C G T A C G T A C T G A C G T A C T G A C G T A T G C A C G T C T G A C G A T A T G C C G T A
T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G A C G T A C G T