Information for 12-GGAGSAGCAGCTSHTC (Motif 20)

C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
Reverse Opposite:
A T C G C T G A C A T G A T C G C G T A C A T G T A G C C G A T A T C G A T G C G C A T A T G C G A T C C G A T A T G C G A T C
p-value:1e-5
log p-value:-1.197e+01
Information Content per bp:1.638
Number of Target Sequences with motif11.0
Percentage of Target Sequences with motif1.83%
Number of Background Sequences with motif157.5
Percentage of Background Sequences with motif0.33%
Average Position of motif in Targets53.7 +/- 24.2bp
Average Position of motif in Background53.6 +/- 33.6bp
Strand Bias (log2 ratio + to - strand density)0.7
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PRDM9(Zf)/Testis-DMC1-ChIP-Seq(GSE35498)/Homer

Match Rank:1
Score:0.67
Offset:-3
Orientation:forward strand
Alignment:---GGAGSAGCAGCTSHTC
ADGGYAGYAGCATCT----
 A C G T A C G T A C G T C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
C T G A C G A T C T A G T C A G G A T C C T G A T C A G G A T C C T G A A C T G A G T C G C T A A C G T A G T C G C A T A C G T A C G T A C G T A C G T

Ascl2/MA0816.1/Jaspar

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:GGAGSAGCAGCTSHTC
--AGCAGCTGCT----
 C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
A C G T A C G T C T G A T C A G T G A C C G T A A C T G T A G C C G A T C A T G A G T C A G C T A C G T A C G T A C G T A C G T

PB0003.1_Ascl2_1/Jaspar

Match Rank:3
Score:0.62
Offset:-2
Orientation:reverse strand
Alignment:--GGAGSAGCAGCTSHTC
NNNNAGCAGCTGCTGAN-
 A C G T A C G T C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
G T A C C G T A C T A G A C G T T C G A T C A G A G T C C G T A A T C G T A G C C G A T A C T G A G T C A G C T T C A G T G C A T C A G A C G T

MyoD(bHLH)/Myotube-MyoD-ChIP-Seq(GSE21614)/Homer

Match Rank:4
Score:0.62
Offset:2
Orientation:forward strand
Alignment:GGAGSAGCAGCTSHTC
--AGCAGCTGCTNN--
 C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
A C G T A C G T C T G A T C A G A G T C C G T A A T C G A T G C C G A T A C T G A G T C G A C T A T C G A G T C A C G T A C G T

Znf263(Zf)/K562-Znf263-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.61
Offset:-1
Orientation:reverse strand
Alignment:-GGAGSAGCAGCTSHTC
GGGAGGACNG-------
 A C G T C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
C T A G A C T G A C T G C G T A A C T G A T C G C G T A A T G C A G C T T A C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:GGAGSAGCAGCTSHTC
--NGAAGC--------
 C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Myod1/MA0499.1/Jaspar

Match Rank:7
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GGAGSAGCAGCTSHTC
NGNGACAGCTGCN----
 A C G T C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
T C G A T C A G A T C G T C A G T C G A A G T C C G T A A C T G T A G C C G A T A C T G A T G C C G T A A C G T A C G T A C G T A C G T

NHLH1/MA0048.2/Jaspar

Match Rank:8
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:GGAGSAGCAGCTSHTC
--CGCAGCTGCG----
 C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
A C G T A C G T T G A C C T A G A T G C T C G A A T C G T A G C A C G T A C T G A G T C A C T G A C G T A C G T A C G T A C G T

Tcf12(bHLH)/GM12878-Tcf12-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:3
Orientation:forward strand
Alignment:GGAGSAGCAGCTSHTC
---NCAGCTGCTG---
 C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
A C G T A C G T A C G T T C G A A G T C C G T A A T C G A T G C C G A T A C T G A G T C A G C T A C T G A C G T A C G T A C G T

Slug(Zf)/Mesoderm-Snai2-ChIP-Seq(GSE61475)/Homer

Match Rank:10
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:GGAGSAGCAGCTSHTC
-SDGCAGGTGCNS---
 C T A G T A C G C G T A C T A G T A C G C G T A A T C G A T G C G C T A A T C G G A T C G C A T A T G C G A T C G A C T A T G C
A C G T A T C G C T A G C T A G A G T C C G T A A C T G A C T G A C G T A C T G A T G C G A T C A T G C A C G T A C G T A C G T