Information for 12-CARMASCRTGGMC (Motif 18)

A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C
Reverse Opposite:
A C T G A C T G A G T C A G T C C G T A G A C T A C T G A T C G A C G T A C T G A G T C A C G T A C T G
p-value:1e-7
log p-value:-1.624e+01
Information Content per bp:1.845
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif1.16%
Number of Background Sequences with motif28.4
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets38.1 +/- 25.8bp
Average Position of motif in Background62.2 +/- 30.5bp
Strand Bias (log2 ratio + to - strand density)3.0
Multiplicity (# of sites on avg that occur together)1.29
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

REST-NRSF(Zf)/Jurkat-NRSF-ChIP-Seq/Homer

Match Rank:1
Score:0.73
Offset:-1
Orientation:reverse strand
Alignment:-CARMASCRTGGMC------
TCAGCACCATGGACAGCTCC
 A C G T A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A G C T G A T C C T G A T C A G T A G C C T G A A T G C G A T C G C T A G A C T C T A G C T A G G T C A A T G C C G T A T C A G G T A C C A G T T A G C G A T C

REST/MA0138.2/Jaspar

Match Rank:2
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CARMASCRTGGMC------
TTCAGCACCATGGACAGCGCC
 A C G T A C G T A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A G T A G C T G A T C T C G A T A C G A T G C C G T A A T G C G A T C G C T A G A C T C T A G T C A G G T C A A T G C G C T A T C A G G T A C C A T G T A G C G A T C

PB0147.1_Max_2/Jaspar

Match Rank:3
Score:0.54
Offset:0
Orientation:reverse strand
Alignment:CARMASCRTGGMC-
NNGTCGCGTGNCAC
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T
G T A C G C T A A C T G A G C T T G A C C T A G A G T C T C A G G A C T A C T G C T A G G T A C T C G A T G A C

GLI2/MA0734.1/Jaspar

Match Rank:4
Score:0.53
Offset:3
Orientation:reverse strand
Alignment:CARMASCRTGGMC--
---CAGTGTGGTCGC
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T A C G T
A C G T A C G T A C G T G A T C G C T A C A T G A C G T A T C G C A G T T A C G C T A G A C G T G T A C A C T G G A T C

EGR2/MA0472.2/Jaspar

Match Rank:5
Score:0.52
Offset:4
Orientation:reverse strand
Alignment:CARMASCRTGGMC--
----TGCGTGGGCGT
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T A C G T
A C G T A C G T A C G T A C G T G A C T T C A G G T A C T C A G A C G T T C A G A C T G T C A G G A T C T C A G C A G T

YY1/MA0095.2/Jaspar

Match Rank:6
Score:0.51
Offset:3
Orientation:forward strand
Alignment:CARMASCRTGGMC--
---CAAGATGGCGGC
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T A C G T
A C G T A C G T A C G T T G A C C T G A T C G A T C A G C G T A A G C T C T A G C T A G G T A C A C T G T C A G G T A C

PB0180.1_Sp4_2/Jaspar

Match Rank:7
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CARMASCRTGGMC--
CAAAGGCGTGGCCAG
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T A C G T
A G T C C G T A C G T A T C G A A T C G A C T G G T A C A C T G A C G T C T A G A C T G G A T C G A T C G T C A C A T G

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:8
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:CARMASCRTGGMC
-VRAACAATGG--
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C
A C G T T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G A C G T A C G T

ZNF711(Zf)/SHSY5Y-ZNF711-ChIP-Seq(GSE20673)/Homer

Match Rank:9
Score:0.50
Offset:6
Orientation:reverse strand
Alignment:CARMASCRTGGMC-
------CTAGGCCT
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T A G C A G C T C T G A A C T G A T C G A T G C G T A C A C G T

ZNF354C/MA0130.1/Jaspar

Match Rank:10
Score:0.50
Offset:7
Orientation:reverse strand
Alignment:CARMASCRTGGMC
-------GTGGAT
 A G T C C G T A C T A G G T A C C G T A A T G C A G T C C T G A A C G T A C T G A C T G G T A C A G T C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A T C G A C G T A C T G A C T G C G T A A C G T