Information for 6-CCCTMKSAGCCAS (Motif 5)

A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
Reverse Opposite:
A T G C A C G T A C T G A C T G A G T C A C G T A T C G T G C A C A G T C G T A A C T G A C T G C T A G
p-value:1e-9
log p-value:-2.209e+01
Information Content per bp:1.872
Number of Target Sequences with motif9.0
Percentage of Target Sequences with motif1.06%
Number of Background Sequences with motif21.8
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets41.2 +/- 22.3bp
Average Position of motif in Background55.2 +/- 27.8bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POL010.1_DCE_S_III/Jaspar

Match Rank:1
Score:0.58
Offset:6
Orientation:forward strand
Alignment:CCCTMKSAGCCAS
------CAGCC--
 A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T

PB0055.1_Rfx4_1/Jaspar

Match Rank:2
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CCCTMKSAGCCAS
TACCATAGCAACGGT
 A C G T A C G T A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
A G C T G T C A T A G C A T G C G T C A A G C T T C G A C T A G G A T C C T G A C T G A A G T C T A C G T C A G C G A T

PB0054.1_Rfx3_1/Jaspar

Match Rank:3
Score:0.56
Offset:-6
Orientation:forward strand
Alignment:------CCCTMKSAGCCAS----
TGTGACCCTTAGCAACCGATTAA
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G A C G T A C G T A C G T A C G T
G A C T C A T G A G C T A T C G G T C A G A T C T G A C A T G C G A C T A G C T T C G A C T A G G A T C C T G A C G T A A G T C T A G C T C A G C G T A G C A T G C A T G C T A G C T A

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.55
Offset:7
Orientation:reverse strand
Alignment:CCCTMKSAGCCAS
-------TGCCAA
 A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A

PB0128.1_Gcm1_2/Jaspar

Match Rank:5
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------CCCTMKSAGCCAS
NTCNTCCCCTATNNGNN--
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
T G A C C A G T A G T C T A G C A G C T A G T C T A G C G T A C G T A C A G C T C T G A A G C T C A T G A T G C T A C G G T A C G C T A A C G T A C G T

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:6
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:CCCTMKSAGCCAS
-----BCAGACWA
 A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
A C G T A C G T A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A

NFIX/MA0671.1/Jaspar

Match Rank:7
Score:0.55
Offset:5
Orientation:forward strand
Alignment:CCCTMKSAGCCAS-
-----CGTGCCAAG
 A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:8
Score:0.52
Offset:-2
Orientation:forward strand
Alignment:--CCCTMKSAGCCAS
TGACCTTTGCCCCA-
 A C G T A C G T A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G T A C G A T C G T C A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:9
Score:0.52
Offset:-2
Orientation:reverse strand
Alignment:--CCCTMKSAGCCAS
TGACCTTTGCCCTAN
 A C G T A C G T A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
C G A T T A C G T G C A G T A C G A T C G A C T A G C T A C G T A T C G G T A C G A T C G A T C G A C T T C G A T A G C

PBX1(Homeobox)/MCF7-PBX1-ChIP-Seq(GSE28007)/Homer

Match Rank:10
Score:0.51
Offset:0
Orientation:forward strand
Alignment:CCCTMKSAGCCAS
GSCTGTCACTCA-
 A G T C A G T C A G T C A C G T G T C A A C G T A T G C C G T A A C T G A G T C A G T C C G T A A T C G
C T A G A T G C A T G C C G A T A C T G G A C T A T G C G C T A T G A C A G C T T A G C G C T A A C G T