Information for 5-GGCTCADBGAAGCAGC (Motif 4)

A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
Reverse Opposite:
A C T G A T G C A C G T A C T G A G T C A C G T A G C T G T A C T G C A G A T C C G A T A T C G C T G A A C T G A G T C A G T C
p-value:1e-10
log p-value:-2.499e+01
Information Content per bp:1.752
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.59%
Number of Background Sequences with motif0.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets56.8 +/- 25.3bp
Average Position of motif in Background14.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RHOXF1/MA0719.1/Jaspar

Match Rank:1
Score:0.54
Offset:-1
Orientation:reverse strand
Alignment:-GGCTCADBGAAGCAGC
NGGATTAN---------
 A C G T A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

POL010.1_DCE_S_III/Jaspar

Match Rank:2
Score:0.52
Offset:0
Orientation:reverse strand
Alignment:GGCTCADBGAAGCAGC
NGCTN-----------
 A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
T A C G A C T G A G T C A C G T A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

Zfp809(Zf)/ES-Zfp809-ChIP-Seq(GSE70799)/Homer

Match Rank:3
Score:0.51
Offset:1
Orientation:reverse strand
Alignment:GGCTCADBGAAGCAGC
-TCCCAGMCRAGCCCC
 A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
A C G T A G C T A G T C A G T C A G T C C T G A T C A G T G C A G A T C T C G A C G T A A C T G A T G C G T A C G T A C G A T C

PAX6(Paired,Homeobox)/Forebrain-Pax6-ChIP-Seq(GSE66961)/Homer

Match Rank:4
Score:0.51
Offset:-2
Orientation:forward strand
Alignment:--GGCTCADBGAAGCAGC--
NGTGTTCAVTSAAGCGKAAA
 A C G T A C G T A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C A C G T A C G T
A G C T T A C G C G A T T C A G A G C T A C G T G A T C C T G A T A G C A G C T A T G C C T G A C G T A A T C G A G T C C T A G A C T G C T G A G T C A T C G A

PLAG1/MA0163.1/Jaspar

Match Rank:5
Score:0.50
Offset:-2
Orientation:forward strand
Alignment:--GGCTCADBGAAGCAGC
GGGGCCCAAGGGGG----
 A C G T A C G T A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
A C T G C T A G A C T G A C T G A T G C A G T C G T A C C G T A T G C A C A T G A C T G A C T G A C T G C T A G A C G T A C G T A C G T A C G T

ZNF415(Zf)/HEK293-ZNF415.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:6
Score:0.50
Offset:0
Orientation:reverse strand
Alignment:GGCTCADBGAAGCAGC
GGCTCYAKCAYC----
 A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
C A T G A C T G A G T C A C G T A G T C G A T C C G T A A C T G T A G C C T G A A G C T T A G C A C G T A C G T A C G T A C G T

POL008.1_DCE_S_I/Jaspar

Match Rank:7
Score:0.48
Offset:7
Orientation:reverse strand
Alignment:GGCTCADBGAAGCAGC
-------NGAAGC---
 A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A C G T G C A T C G A T A C G T G A C A C G T A C G T A C G T

PB0030.1_Hnf4a_1/Jaspar

Match Rank:8
Score:0.48
Offset:-6
Orientation:forward strand
Alignment:------GGCTCADBGAAGCAGC
CTCCAGGGGTCAATTGA-----
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A A C G T A C G T A C G T A C G T A C G T

ETS:E-box(ETS,bHLH)/HPC7-Scl-ChIP-Seq(GSE22178)/Homer

Match Rank:9
Score:0.47
Offset:6
Orientation:forward strand
Alignment:GGCTCADBGAAGCAGC--
------AGGAAACAGCTG
 A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A C T G A C T G C G T A C G T A T C G A A G T C C T G A A T C G G T A C G C A T C A T G

PB0153.1_Nr2f2_2/Jaspar

Match Rank:10
Score:0.47
Offset:-6
Orientation:forward strand
Alignment:------GGCTCADBGAAGCAGC
CGCGCCGGGTCACGTA------
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G A C T G A G T C A G C T A T G C C G T A C T A G A C G T A C T G C T G A G T C A C T A G G T A C G T C A A T C G G T A C
T A G C A C T G T G A C A C T G A G T C A T G C C T A G A C T G A C T G A C G T A G T C C T G A T A G C A C T G A G C T G C T A A C G T A C G T A C G T A C G T A C G T A C G T