Information for 4-CTAGTGGTCA (Motif 2)

G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A
Reverse Opposite:
A C G T C A T G G C T A A G T C A G T C C G T A A T G C A C G T G T C A A C T G
p-value:1e-40
log p-value:-9.410e+01
Information Content per bp:1.839
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.84%
Number of Background Sequences with motif98.3
Percentage of Background Sequences with motif0.21%
Average Position of motif in Targets43.4 +/- 17.0bp
Average Position of motif in Background49.0 +/- 31.6bp
Strand Bias (log2 ratio + to - strand density)1.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0118.1_Esrra_2/Jaspar

Match Rank:1
Score:0.73
Offset:-2
Orientation:forward strand
Alignment:--CTAGTGGTCA-----
GGCGAGGGGTCAAGGGC
 A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
T A C G C A T G A T G C A C T G G C T A T A C G T C A G C A T G A C T G C G A T A G T C C T G A G C T A C T A G A T C G A T C G G T A C

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:2
Score:0.71
Offset:2
Orientation:forward strand
Alignment:CTAGTGGTCA
--AGRGGTCA
 G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A
A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A

PB0196.1_Zbtb7b_2/Jaspar

Match Rank:3
Score:0.69
Offset:-3
Orientation:reverse strand
Alignment:---CTAGTGGTCA----
NNANTGGTGGTCTTNNN
 A C G T A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A A C G T A C G T A C G T A C G T
T C A G A G C T G T C A T G C A C G A T C T A G C T A G C A G T A T C G C A T G C A G T T G A C A C G T G A C T G T C A G C A T C T A G

PB0057.1_Rxra_1/Jaspar

Match Rank:4
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTAGTGGTCA-----
NTNNNGGGGTCANGNNN
 A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0030.1_Hnf4a_1/Jaspar

Match Rank:5
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CTAGTGGTCA-----
CTCCAGGGGTCAATTGA
 A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A A C G T A C G T A C G T A C G T A C G T
A T G C C A G T A G C T T G A C G T C A T C A G C T A G A C T G A C T G A C G T A G T C T G C A G T C A A G C T G C A T C A T G T G C A

PH0111.1_Nkx2-2/Jaspar

Match Rank:6
Score:0.65
Offset:-6
Orientation:reverse strand
Alignment:------CTAGTGGTCA-
NANTTTCAAGTGGTTAN
 A C G T A C G T A C G T A C G T A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A A C G T
G C T A T G C A G C A T G C A T A G C T G C A T A G T C C T G A C G T A A C T G C G A T C T A G A T C G G A C T A G C T G C T A C G A T

CTCF/MA0139.1/Jaspar

Match Rank:7
Score:0.65
Offset:-9
Orientation:reverse strand
Alignment:---------CTAGTGGTCA
TAGCGCCCCCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A
A G C T C T G A A T C G G A T C C A T G G T A C G A T C G T A C G A T C G A T C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:8
Score:0.65
Offset:-10
Orientation:forward strand
Alignment:----------CTAGTGGTCA
ANAGTGCCACCTGGTGGCCA
 A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A
T G C A A G C T C T G A A T C G G A C T C T A G G T A C G A T C G T C A A G T C G T A C G A C T C T A G A T C G G C A T C A T G C A T G G A T C G T A C C T G A

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:9
Score:0.64
Offset:4
Orientation:forward strand
Alignment:CTAGTGGTCA
----AGGTCA
 G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A
A C G T A C G T A C G T A C G T C T G A C A T G C A T G C G A T G T A C T G C A

NKX2-3/MA0672.1/Jaspar

Match Rank:10
Score:0.64
Offset:-2
Orientation:reverse strand
Alignment:--CTAGTGGTCA
NTCAAGTGGN--
 A C G T A C G T G T A C C A G T T G C A A T C G A C G T A C T G A C T G C G A T G T A C C G T A
A G C T G C A T A G T C C T G A G T C A A C T G C G A T C T A G A T C G A C G T A C G T A C G T