Information for 22-CTGCATAGTGCAA (Motif 27)

A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A
Reverse Opposite:
A G C T A C G T A C T G A G T C C G T A A T G C A C G T C T G A A G C T A C T G A G T C C G T A A T C G
p-value:1e-8
log p-value:-1.976e+01
Information Content per bp:1.926
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.53%
Number of Background Sequences with motif1.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets44.4 +/- 34.6bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)0.6
Multiplicity (# of sites on avg that occur together)1.25
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.61
Offset:0
Orientation:forward strand
Alignment:CTGCATAGTGCAA
ATGCATAATTCA-
 A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A
G C T A C G A T C T A G G T A C G C T A C G A T C G T A G C T A C G A T C A G T G A T C G C T A A C G T

OCT:OCT-short(POU,Homeobox)/NPC-OCT6-ChIP-Seq(GSE43916)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CTGCATAGTGCAA
WYATGCATWATGCAT
 A C G T A C G T A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A
C G T A A G C T C G T A A C G T A C T G G T A C C G T A A C G T C G A T C G T A A C G T A C T G A G T C C G T A C G A T

CEBPA/MA0102.3/Jaspar

Match Rank:3
Score:0.59
Offset:3
Orientation:reverse strand
Alignment:CTGCATAGTGCAA-
---NATTGTGCAAT
 A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A A C G T
A C G T A C G T A C G T C A G T T C G A A C G T A C G T C T A G A C G T A C T G G T A C C G T A C G T A A G C T

CEBP(bZIP)/ThioMac-CEBPb-ChIP-Seq(GSE21512)/Homer

Match Rank:4
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CTGCATAGTGCAA-
----ATTGCGCAAC
 A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A A C G T
A C G T A C G T A C G T A C G T T G C A A G C T A C G T C T A G G A T C C T A G G A T C G T C A C T G A A G T C

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:5
Score:0.56
Offset:-4
Orientation:forward strand
Alignment:----CTGCATAGTGCAA
CANAGNNCAAAGTCCA-
 A C G T A C G T A C G T A C G T A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A A C G T

Ddit3::Cebpa/MA0019.1/Jaspar

Match Rank:6
Score:0.56
Offset:5
Orientation:forward strand
Alignment:CTGCATAGTGCAA----
-----AGATGCAATCCC
 A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C T A G C T G A A G C T A C T G G T A C G T C A T G C A A G C T T G A C T A G C A G T C

PB0134.1_Hnf4a_2/Jaspar

Match Rank:7
Score:0.56
Offset:0
Orientation:forward strand
Alignment:CTGCATAGTGCAA---
GGCAAAAGTCCAATAA
 A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A A C G T A C G T A C G T
A C G T A C G T G A T C G T A C C G T A C T G A C T G A A C T G A C G T G T A C A G T C C T G A G T C A C G A T G T C A G C A T

PH0148.1_Pou3f3/Jaspar

Match Rank:8
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CTGCATAGTGCAA
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

HNF4G/MA0484.1/Jaspar

Match Rank:9
Score:0.55
Offset:-3
Orientation:forward strand
Alignment:---CTGCATAGTGCAA
AGAGTCCAAAGTCCA-
 A C G T A C G T A C G T A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:10
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGCATAGTGCAA--
ATGAATWATTCATGA
 A T G C C G A T A C T G A G T C C T G A A G C T C G T A A T C G A C G T A C T G A G T C C G T A C T G A A C G T A C G T
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A