Information for 18-RRMAGYYMATCTCCAM (Motif 24)

C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C
Reverse Opposite:
C A T G A C G T A C T G A C T G C G T A A C T G C G T A A C G T C A G T C T G A C T A G A G T C A C G T A C T G G A C T A G T C
p-value:1e-8
log p-value:-1.986e+01
Information Content per bp:1.823
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif0.55%
Number of Background Sequences with motif1.4
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.2 +/- 7.1bp
Average Position of motif in Background88.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0139.1_Pitx3/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM
GNNAGCTAATCCCCCN
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C
A T C G T A C G G A T C G T C A T A C G G T A C C G A T C G T A C T G A A C G T A G T C A G T C G A T C A T G C A G T C A G C T

PH0015.1_Crx/Jaspar

Match Rank:2
Score:0.60
Offset:2
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM--
--AGGCTAATCCCCAANG
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T A C G T
A C G T A C G T G T C A T A C G T C A G G A T C C G A T C G T A C G T A A C G T A G T C A G T C A T G C A T G C G C T A G C T A T G A C T C A G

ZNF354C/MA0130.1/Jaspar

Match Rank:3
Score:0.59
Offset:10
Orientation:forward strand
Alignment:RRMAGYYMATCTCCAM
----------ATCCAC
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T G C A G C A T A G T C A G T C C G T A A T G C

PH0123.1_Obox3/Jaspar

Match Rank:4
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM--
-ATAGTTAATCCCCCNNA
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T A C G T
A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0122.1_Obox2/Jaspar

Match Rank:5
Score:0.57
Offset:1
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM--
-ATAGTTAATCCCCCTCA
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T A C G T
A C G T C T G A C A G T G C T A C A T G G C A T G C A T C G T A G C T A C A G T G T A C A G T C G A T C G A T C G A T C A G C T T G A C G C T A

PH0124.1_Obox5_1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM-
NANANTTAATCCCNNNN
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PH0129.1_Otx1/Jaspar

Match Rank:7
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM-
NNNAATTAATCCCCNCN
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T
T C G A C G A T C G T A C G T A C T G A G A C T C G A T C G T A C G T A A C G T G A T C A G T C A T G C A G T C G C A T G T A C G A C T

PH0121.1_Obox1/Jaspar

Match Rank:8
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM--
-NTAGTTAATCCCCTTAN
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T A C G T
A C G T C T A G C G A T G C T A A C T G G C A T C G A T C G T A C T G A A C G T G T A C A G T C G A T C G A T C A G C T A G C T G C T A G C T A

PH0130.1_Otx2/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:RRMAGYYMATCTCCAM-
GANNATTAATCCCTNNN
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T
C A T G G T C A G A T C C T G A T C G A G A C T C G A T C G T A C G T A C A G T G A T C A G T C A G T C A G C T G C T A G A T C G T C A

PH0125.1_Obox5_2/Jaspar

Match Rank:10
Score:0.52
Offset:0
Orientation:forward strand
Alignment:RRMAGYYMATCTCCAM-
GATAATTAATCCCTCTT
 C T A G C T A G G T A C C G T A A C T G A G T C A G C T G T C A C G T A A C G T A G T C A C G T A G T C A G T C C G T A G T A C A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T