Information for 4-KGGCMRCAGAGTC (Motif 3)

C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C
Reverse Opposite:
A T C G C T G A A T G C A G C T A G T C C G A T A T C G A G T C A C G T C T A G A G T C A T G C G T A C
p-value:1e-17
log p-value:-3.997e+01
Information Content per bp:1.547
Number of Target Sequences with motif20.0
Percentage of Target Sequences with motif2.26%
Number of Background Sequences with motif65.8
Percentage of Background Sequences with motif0.14%
Average Position of motif in Targets47.3 +/- 23.4bp
Average Position of motif in Background48.8 +/- 30.6bp
Strand Bias (log2 ratio + to - strand density)0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HNF4G/MA0484.1/Jaspar

Match Rank:1
Score:0.58
Offset:0
Orientation:forward strand
Alignment:KGGCMRCAGAGTC--
AGAGTCCAAAGTCCA
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C A C G T A C G T
C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

SOX10/MA0442.1/Jaspar

Match Rank:2
Score:0.58
Offset:5
Orientation:reverse strand
Alignment:KGGCMRCAGAGTC
-----ACAAAG--
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C
A C G T A C G T A C G T A C G T A C G T G T C A A T G C C G T A T G C A C G T A C T A G A C G T A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:3
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-KGGCMRCAGAGTC--
CANAGNNCAAAGTCCA
 A C G T C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C A C G T A C G T
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

POL009.1_DCE_S_II/Jaspar

Match Rank:4
Score:0.56
Offset:4
Orientation:reverse strand
Alignment:KGGCMRCAGAGTC
----CACAGN---
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C
A C G T A C G T A C G T A C G T T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T

Sox4(HMG)/proB-Sox4-ChIP-Seq(GSE50066)/Homer

Match Rank:5
Score:0.55
Offset:2
Orientation:reverse strand
Alignment:KGGCMRCAGAGTC
--GGAACAAAGR-
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C
A C G T A C G T T C A G T C A G T C G A C G T A A G T C C G T A C G T A C G T A A C T G T C A G A C G T

Sox9(HMG)/Limb-SOX9-ChIP-Seq(GSE73225)/Homer

Match Rank:6
Score:0.54
Offset:5
Orientation:reverse strand
Alignment:KGGCMRCAGAGTC----
-----ACAAAGGNBCCT
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A T A G C C G T A T C G A C G T A T C A G T A C G T C A G A G T C A G T C G A T C G C A T

Sox10(HMG)/SciaticNerve-Sox3-ChIP-Seq(GSE35132)/Homer

Match Rank:7
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:KGGCMRCAGAGTC
--VRRACAAWGG-
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C
A C G T A C G T T A G C C T A G T C G A C G T A A G T C C G T A C T G A C G T A C T A G T A C G A C G T

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:KGGCMRCAGAGTC--
-----CCAGACRSVB
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Hnf4a/MA0114.3/Jaspar

Match Rank:9
Score:0.53
Offset:1
Orientation:forward strand
Alignment:KGGCMRCAGAGTC----
-GGGGTCAAAGTCCAAT
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C A C G T A C G T A C G T A C G T
A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

RUNX1/MA0002.2/Jaspar

Match Rank:10
Score:0.53
Offset:0
Orientation:reverse strand
Alignment:KGGCMRCAGAGTC
AAACCACAGAN--
 C A T G A T C G T C A G G A T C T G C A T C A G T A G C C G T A T C A G C T G A A T C G G A C T T A G C
G C T A C T G A T C G A T G A C G T A C C T G A T A G C G C T A T C A G T C G A T G A C A C G T A C G T