Information for 12-CWRTTTTAAAATW (Motif 16)

A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
Reverse Opposite:
G C T A C G T A A C G T A G C T A C G T A C G T C G T A C G T A C G T A C G T A A G T C C G T A T C A G
p-value:1e-8
log p-value:-1.854e+01
Information Content per bp:1.819
Number of Target Sequences with motif8.0
Percentage of Target Sequences with motif0.90%
Number of Background Sequences with motif21.6
Percentage of Background Sequences with motif0.05%
Average Position of motif in Targets42.8 +/- 23.4bp
Average Position of motif in Background47.7 +/- 24.7bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

CHR(?)/Hela-CellCycle-Expression/Homer

Match Rank:1
Score:0.69
Offset:0
Orientation:forward strand
Alignment:CWRTTTTAAAATW
CGGTTTCAAA---
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
T A G C T C A G C A T G G C A T A G C T C G A T A T G C C G T A C G T A G T C A A C G T A C G T A C G T

LIN54/MA0619.1/Jaspar

Match Rank:2
Score:0.66
Offset:3
Orientation:forward strand
Alignment:CWRTTTTAAAATW
---ATTTGAATT-
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
A C G T A C G T A C G T C G T A A C G T A C G T A G C T C T A G C G T A C G T A G A C T G A C T A C G T

HOXD11/MA0908.1/Jaspar

Match Rank:3
Score:0.66
Offset:2
Orientation:forward strand
Alignment:CWRTTTTAAAATW
--GTCGTAAAAA-
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
A C G T A C G T T C A G A C G T G A T C C T A G C G A T C G T A C G T A G C T A G C T A G C T A A C G T

HOXC10/MA0905.1/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CWRTTTTAAAATW
--GTCGTAAAAT-
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
A C G T A C G T T C A G G A C T G T A C C T A G C G A T G C T A C G T A C G T A G C T A G C A T A C G T

Cdx2(Homeobox)/mES-Cdx2-ChIP-Seq(GSE14586)/Homer

Match Rank:5
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CWRTTTTAAAATW
--GTCATAAAAN-
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
A C G T A C G T T C A G A G C T G T A C C G T A A C G T C G T A C G T A C G T A G C T A G A C T A C G T

HOXD13(Homeobox)/Chicken-Hoxd13-ChIP-Seq(GSE38910)/Homer

Match Rank:6
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CWRTTTTAAAATW
-NCYAATAAAA--
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
A C G T C G A T T A G C G A C T G T C A C G T A A C G T C G T A C G T A C G T A G C T A A C G T A C G T

PB0123.1_Foxl1_2/Jaspar

Match Rank:7
Score:0.63
Offset:-4
Orientation:reverse strand
Alignment:----CWRTTTTAAAATW
NNTTTTGTTTTGATNT-
 A C G T A C G T A C G T A C G T A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
C A G T C A T G G A C T C A G T G C A T G C A T T C A G A C G T C A G T C G A T C A G T C T A G G C T A G C A T G C T A C G A T A C G T

HOXC12/MA0906.1/Jaspar

Match Rank:8
Score:0.63
Offset:1
Orientation:forward strand
Alignment:CWRTTTTAAAATW
-GGTCGTAAAAA-
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
A C G T C T A G T C A G G A C T G T A C T C A G A G C T G C T A C G T A G C T A G T C A G C T A A C G T

PH0075.1_Hoxd10/Jaspar

Match Rank:9
Score:0.63
Offset:-1
Orientation:forward strand
Alignment:-CWRTTTTAAAATW---
AATGCAATAAAATTTAT
 A C G T A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T A C G T A C G T A C G T
T G C A C T G A A C G T T C A G G A T C G T C A C G T A A G C T C G T A C G T A C G T A T C G A G A C T C G A T C G A T C G T A G C A T

CDX4(Homeobox)/ZebrafishEmbryos-Cdx4.Myc-ChIP-Seq(GSE48254)/Homer

Match Rank:10
Score:0.62
Offset:1
Orientation:forward strand
Alignment:CWRTTTTAAAATW
-NGYCATAAAWCH
 A G T C C G A T C T A G A C G T A C G T C G A T A C G T C G T A C G T A C T G A C G T A G C A T C G A T
A C G T T A C G T C A G G A T C G T A C T C G A G A C T G C T A G C T A G C T A C G T A G A T C G T C A