Information for 1-ATGTTAATGCGGGGTC (Motif 3)

C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C
Reverse Opposite:
A C T G C G T A A G T C G T A C G T A C T A G C A C T G A G T C G T C A A C G T A G C T C T G A C T G A A T G C G C T A A C G T
p-value:1e-12
log p-value:-2.843e+01
Information Content per bp:1.911
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif4.49%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets59.0 +/- 23.0bp
Average Position of motif in Background69.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)1.0
Multiplicity (# of sites on avg that occur together)1.50
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Brn1(POU,Homeobox)/NPC-Brn1-ChIP-Seq(GSE35496)/Homer

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-ATGTTAATGCGGGGTC
TATGCWAATBAV-----
 A C G T C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C
G A C T C G T A A C G T A C T G A G T C C G T A C T G A C G T A C A G T A C G T G T C A T C A G A C G T A C G T A C G T A C G T A C G T

Oct6(POU,Homeobox)/NPC-Pou3f1-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-ATGTTAATGCGGGGTC
WATGCAAATGAG-----
 A C G T C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C
G C A T C G T A C G A T A C T G A G T C G C T A C T G A C G T A C A G T A C T G C G T A T C A G A C G T A C G T A C G T A C G T A C G T

PB0024.1_Gcm1_1/Jaspar

Match Rank:3
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:ATGTTAATGCGGGGTC--
--NNNNATGCGGGTNNNN
 C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C A C G T A C G T
A C G T A C G T G T C A C T G A G C A T A C T G T C G A G A C T T C A G A T G C C A T G A C T G A C T G A G C T C G T A A G T C A C T G C G T A

PB0025.1_Glis2_1/Jaspar

Match Rank:4
Score:0.58
Offset:4
Orientation:reverse strand
Alignment:ATGTTAATGCGGGGTC----
----NTNTGGGGGGTCNNNA
 C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G T A C G A C T T C A G A C G T C T A G C T A G C A T G C A T G A C T G A C T G A C G T T G A C A T C G C G T A C G A T C T G A

PB0157.1_Rara_2/Jaspar

Match Rank:5
Score:0.57
Offset:5
Orientation:forward strand
Alignment:ATGTTAATGCGGGGTC-----
-----AGAGCGGGGTCAAGTA
 C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C A T G G T C A C A T G A G T C A T C G T A C G A C T G C A T G C G A T A G T C C T G A G T C A A C T G A C G T G T C A

GLIS3/MA0737.1/Jaspar

Match Rank:6
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:ATGTTAATGCGGGGTC
--CTTCGTGGGGGGTC
 C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C
A C G T A C G T T A G C C A G T G C A T G A T C T C A G G A C T C T A G A C T G C T A G C T A G A C T G T A C G A G C T T G A C

PB0057.1_Rxra_1/Jaspar

Match Rank:7
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ATGTTAATGCGGGGTC------
-----NTNNNGGGGTCANGNNN
 C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A

PB0010.1_Egr1_1/Jaspar

Match Rank:8
Score:0.56
Offset:5
Orientation:reverse strand
Alignment:ATGTTAATGCGGGGTC---
-----ANTGCGGGGGCGGN
 C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G T C A C T G A G C A T T C A G T G A C C A T G A C T G C T A G A T C G A C T G A G T C C T A G C A T G C T G A

GCM2/MA0767.1/Jaspar

Match Rank:9
Score:0.56
Offset:5
Orientation:forward strand
Alignment:ATGTTAATGCGGGGTC
-----TATGCGGGTA-
 C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C
A C G T A C G T A C G T A C G T A C G T A C G T T C G A A G C T T C A G A T G C C A T G A C T G C T A G G A C T C T G A A C G T

POU5F1B/MA0792.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATGTTAATGCGGGGTC
TATGCAAAT--------
 A C G T C G T A C A G T A T C G A G C T A G C T C T G A C G T A A C G T A C T G A G T C A T C G A C T G A C T G C T A G A C G T A G T C
G A C T C G T A A G C T C A T G A G T C C G T A C G T A C G T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T