Information for 6-CAGCAGRGGGCAG (Motif 2)

A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
Reverse Opposite:
A G T C A C G T A T C G T A G C A G T C G T A C A G C T A T G C A C G T A T C G A G T C G A C T A C T G
p-value:1e-30
log p-value:-7.104e+01
Information Content per bp:1.759
Number of Target Sequences with motif44.0
Percentage of Target Sequences with motif4.84%
Number of Background Sequences with motif199.6
Percentage of Background Sequences with motif0.42%
Average Position of motif in Targets62.2 +/- 19.5bp
Average Position of motif in Background50.4 +/- 33.4bp
Strand Bias (log2 ratio + to - strand density)1.7
Multiplicity (# of sites on avg that occur together)1.06
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:CAGCAGRGGGCAG
---CAAAGGTCAG
 A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
A C G T A C G T A C G T A G T C T G C A T C G A C T G A A C T G C A T G A C G T A T G C G T C A T A C G

BORIS(Zf)/K562-CTCFL-ChIP-Seq(GSE32465)/Homer

Match Rank:2
Score:0.66
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGRGGGCAG-----
GCCASCAGGGGGCGCYVNNG
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G A C G T A C G T A C G T A C G T A C G T
C T A G T A G C A G T C C G T A T A G C G A T C C G T A A C T G C T A G C A T G A C T G A C T G G T A C C T A G A T G C G A T C T C A G A C T G T C A G A T C G

Unknown-ESC-element(?)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.65
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGRGGGCAG
CACAGCAGGGGG---
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
T G A C G C T A T G A C C G T A T C A G G A T C C G T A C A T G C A T G C T A G C T A G C T A G A C G T A C G T A C G T

Zic3(Zf)/mES-Zic3-ChIP-Seq(GSE37889)/Homer

Match Rank:4
Score:0.65
Offset:-3
Orientation:reverse strand
Alignment:---CAGCAGRGGGCAG
DCHCAGCAGGRGGCC-
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
C A T G T G A C G T C A A T G C G C T A T A C G A G T C C T G A C A T G A T C G C T A G C T A G A T C G A T G C G T A C A C G T

CTCF(Zf)/CD4+-CTCF-ChIP-Seq(Barski_et_al.)/Homer

Match Rank:5
Score:0.64
Offset:-4
Orientation:reverse strand
Alignment:----CAGCAGRGGGCAG---
TGGCCACCAGGTGGCACTNT
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G A C G T A C G T A C G T
G A C T C A T G C T A G G T A C G A T C C G T A T A G C G A T C C T G A A C T G T C A G C A G T C T A G C A T G G A T C C T G A T A G C G A C T T C G A A C G T

CTCF/MA0139.1/Jaspar

Match Rank:6
Score:0.64
Offset:-4
Orientation:forward strand
Alignment:----CAGCAGRGGGCAG--
TGGCCACCAGGGGGCGCTA
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G A C G T A C G T
G A C T C A T G C T A G G T A C G T A C C G T A T A G C G A T C C T G A C T A G C T A G C A T G C T A G C A T G G T A C C T A G T A G C G A C T T C G A

RXR(NR),DR1/3T3L1-RXR-ChIP-Seq(GSE13511)/Homer

Match Rank:7
Score:0.60
Offset:-2
Orientation:forward strand
Alignment:--CAGCAGRGGGCAG
TAGGGCAAAGGTCA-
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
A G C T C T G A C T A G C T A G A C T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C T C G A A C G T

Pparg::Rxra/MA0065.2/Jaspar

Match Rank:8
Score:0.58
Offset:-3
Orientation:forward strand
Alignment:---CAGCAGRGGGCAG
GTAGGGCAAAGGTCA-
 A C G T A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
A T C G A G C T C T G A C T A G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T

COUP-TFII(NR)/Artia-Nr2f2-ChIP-Seq(GSE46497)/Homer

Match Rank:9
Score:0.58
Offset:4
Orientation:forward strand
Alignment:CAGCAGRGGGCAG
----AGRGGTCA-
 A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
A C G T A C G T A C G T A C G T T C G A T C A G T C G A A C T G C A T G A C G T A G T C C T G A A C G T

PPARE(NR),DR1/3T3L1-Pparg-ChIP-Seq(GSE13511)/Homer

Match Rank:10
Score:0.57
Offset:-2
Orientation:reverse strand
Alignment:--CAGCAGRGGGCAG
TGGGGCAAAGGTCA-
 A C G T A C G T A G T C C G T A A C T G A T G C C G T A T A C G T C G A A C T G T C A G A T C G A T G C C G T A A C T G
C A G T C T A G C A T G C T A G C A T G T A G C T G C A T C G A C T G A C T A G C A T G A C G T A T G C G C T A A C G T