Information for 4-SSWCYYKGASCTGAGK (Motif 5)

A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
Reverse Opposite:
G T C A A T G C A C G T G T A C C G T A A C T G A T C G A C G T A G T C G T C A C T A G C T A G A C T G C G A T A T G C A T C G
p-value:1e-9
log p-value:-2.121e+01
Information Content per bp:1.806
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif4.00%
Number of Background Sequences with motif1.6
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets40.5 +/- 30.6bp
Average Position of motif in Background39.1 +/- 30.9bp
Strand Bias (log2 ratio + to - strand density)1.6
Multiplicity (# of sites on avg that occur together)1.33
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:reverse strand
Alignment:SSWCYYKGASCTGAGK
TGACCTTGACCT----
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
G A C T T A C G G C T A T G A C A G T C A G C T A C G T C T A G T C G A G T A C G T A C A G C T A C G T A C G T A C G T A C G T

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:2
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:SSWCYYKGASCTGAGK
TGACCTTGACCT----
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
G A C T T C A G T G C A A G T C A G T C G A C T A C G T T A C G C G T A G T A C G A T C G A C T A C G T A C G T A C G T A C G T

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:3
Score:0.58
Offset:6
Orientation:reverse strand
Alignment:SSWCYYKGASCTGAGK
------TGACCTYA--
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A G C T C T A G G C T A T G A C A T G C A G C T A G T C C G T A A C G T A C G T

MF0004.1_Nuclear_Receptor_class/Jaspar

Match Rank:4
Score:0.57
Offset:6
Orientation:reverse strand
Alignment:SSWCYYKGASCTGAGK
------TGACCT----
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T C A T G G C T A G T A C G T A C G A C T A C G T A C G T A C G T A C G T

AP-2alpha(AP2)/Hela-AP2alpha-ChIP-Seq(GSE31477)/Homer

Match Rank:5
Score:0.54
Offset:5
Orientation:forward strand
Alignment:SSWCYYKGASCTGAGK-
-----ATGCCCTGAGGC
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T G C T A C G A T C A T G A T G C A G T C A G T C G A C T T A C G T C G A C T A G A C T G T A G C

Hnf4a/MA0114.3/Jaspar

Match Rank:6
Score:0.54
Offset:-3
Orientation:reverse strand
Alignment:---SSWCYYKGASCTGAGK
ATTGGACTTTGACCCC---
 A C G T A C G T A C G T A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
C T G A A G C T G A C T T C A G T C A G T G C A T G A C A G C T G A C T A G C T T C A G G T C A G T A C G A T C A G T C A G T C A C G T A C G T A C G T

ZEB1/MA0103.2/Jaspar

Match Rank:7
Score:0.54
Offset:4
Orientation:forward strand
Alignment:SSWCYYKGASCTGAGK
----CCTCACCTG---
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T T G A C A G T C C G A T A G T C C G T A A G T C A G T C A C G T A C T G A C G T A C G T A C G T

Erra(NR)/HepG2-Erra-ChIP-Seq(GSE31477)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:SSWCYYKGASCTGAGK
-----CTGACCTTTG-
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A T G C A C G T T A C G T G C A G T A C A G T C G A C T A G C T A C G T T C A G A C G T

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-SSWCYYKGASCTGAGK
TGGACTTTGNNCTNTG-
 A C G T A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
C G A T C T A G T C A G G T C A G T A C G A C T A G C T A C G T C T A G T C G A G T A C G A T C G A C T A G T C C G A T C A T G A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:10
Score:0.53
Offset:9
Orientation:forward strand
Alignment:SSWCYYKGASCTGAGK
---------GCTGTG-
 A T G C A T C G C G T A A G T C A G T C A G T C A C G T A C T G C G T A A T G C A G T C A C G T A C T G C G T A A T C G A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T T A C G T A G C C A G T A T C G G A C T A T C G A C G T