Information for 25-TCAGGTTAAG (Motif 47)

A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G
Reverse Opposite:
A G T C A C G T A C G T C G T A C G T A A G T C A G T C A C G T A C T G C G T A
p-value:1e-3
log p-value:-7.220e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif2.6
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets18.0 +/- 0.0bp
Average Position of motif in Background50.2 +/- 33.1bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Six1(Homeobox)/Myoblast-Six1-ChIP-Chip(GSE20150)/Homer

Match Rank:1
Score:0.64
Offset:-3
Orientation:forward strand
Alignment:---TCAGGTTAAG
GKVTCADRTTWC-
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G
C T A G C A T G T G C A A C G T A G T C C G T A C A T G T C A G A C G T A C G T G C T A A G T C A C G T

RAR:RXR(NR),DR5/ES-RAR-ChIP-Seq(GSE56893)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:forward strand
Alignment:TCAGGTTAAG----
--AGGTCAAGGTCA
 A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T T C G A A C T G C A T G A G C T A G T C C G T A C T G A C T A G A C T G C G A T A T G C C T G A

ZEB1/MA0103.2/Jaspar

Match Rank:3
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TCAGGTTAAG
-CAGGTGAGG
 A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G
A C G T A G T C C G T A A C T G A C T G A C G T C T A G G C T A C T A G A C T G

ZEB1(Zf)/PDAC-ZEB1-ChIP-Seq(GSE64557)/Homer

Match Rank:4
Score:0.61
Offset:0
Orientation:forward strand
Alignment:TCAGGTTAAG
VCAGGTRDRY
 A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G
T G C A G T A C C G T A A T C G A C T G A C G T C T A G C G A T T C G A A G T C

RARg(NR)/ES-RARg-ChIP-Seq(GSE30538)/Homer

Match Rank:5
Score:0.60
Offset:2
Orientation:forward strand
Alignment:TCAGGTTAAG----
--AGGTCAAGGTCA
 A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T
A C G T A C G T C T G A C T A G A C T G G C A T A T G C C G T A C T G A C T A G A C T G A C G T A G T C C T G A

THRb(NR)/Liver-NR1A2-ChIP-Seq(GSE52613)/Homer

Match Rank:6
Score:0.60
Offset:0
Orientation:forward strand
Alignment:TCAGGTTAAG
TRAGGTCA--
 A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G
G C A T T C A G C T G A A T C G A C T G C G A T G A T C C T G A A C G T A C G T

PH0040.1_Hmbox1/Jaspar

Match Rank:7
Score:0.59
Offset:-4
Orientation:forward strand
Alignment:----TCAGGTTAAG---
GAAAACTAGTTAACATC
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T
T C A G G C T A C T G A C T G A C G T A A G T C A C G T C T G A C T A G A C G T G C A T C G T A C G T A A G T C C G T A C G A T A T G C

PB0081.1_Tcf1_1/Jaspar

Match Rank:8
Score:0.58
Offset:-2
Orientation:reverse strand
Alignment:--TCAGGTTAAG-----
NNNTTAGTTAACTNANN
 A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G A C G T A C G T A C G T A C G T A C G T
G A C T C A G T G A C T A G C T G A C T C T G A T A C G G A C T C G A T C G T A C G T A A G T C A G C T C T G A T C G A C T A G A C G T

SNAI2/MA0745.1/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TCAGGTTAAG
AACAGGTGT--
 A C G T A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G
C T G A C T G A G T A C G C T A C T A G C T A G G A C T C A T G A G C T A C G T A C G T

Six2(Homeobox)/NephronProgenitor-Six2-ChIP-Seq(GSE39837)/Homer

Match Rank:10
Score:0.57
Offset:-3
Orientation:reverse strand
Alignment:---TCAGGTTAAG
GKMTCADRTTWC-
 A C G T A C G T A C G T A C G T A G T C C G T A A C T G A C T G A C G T A C G T C G T A C G T A A C T G
C T A G C A G T T G C A A C G T G A T C T C G A C T A G T C A G A C G T C A G T G C A T G A T C A C G T