Information for 2-CACTCTACCCAGG (Motif 3)

A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
Reverse Opposite:
A G T C A G T C C G A T A C T G A T C G C T A G A G C T C T G A A T C G C G T A A C T G A C G T C T A G
p-value:1e-9
log p-value:-2.234e+01
Information Content per bp:1.755
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif23.53%
Number of Background Sequences with motif26.0
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets20.5 +/- 22.8bp
Average Position of motif in Background51.3 +/- 21.7bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bapx1(Homeobox)/VertebralCol-Bapx1-ChIP-Seq(GSE36672)/Homer

Match Rank:1
Score:0.63
Offset:-3
Orientation:reverse strand
Alignment:---CACTCTACCCAGG
MRSCACTYAA------
 A C G T A C G T A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
G T C A C T G A T A G C A G T C C G T A G T A C G C A T A G T C C T G A T C G A A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.2(Homeobox)/NPC-Nkx2.2-ChIP-Seq(GSE61673)/Homer

Match Rank:2
Score:0.61
Offset:-2
Orientation:reverse strand
Alignment:--CACTCTACCCAGG
NSCACTYVAV-----
 A C G T A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
C T A G T A G C A G T C G C T A G A T C A C G T G A T C T C G A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Nkx2.5(Homeobox)/HL1-Nkx2.5.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:3
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CACTCTACCCAGG
AASCACTCAA------
 A C G T A C G T A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
C T G A C T G A T A G C G A T C G C T A G T A C A C G T G A T C T G C A C G T A A C G T A C G T A C G T A C G T A C G T A C G T

Nkx2.1(Homeobox)/LungAC-Nkx2.1-ChIP-Seq(GSE43252)/Homer

Match Rank:4
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CACTCTACCCAGG
RSCACTYRAG-----
 A C G T A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
C T A G T A C G A G T C C G T A A G T C A C G T A G T C T C G A C G T A T A C G A C G T A C G T A C G T A C G T A C G T

PB0091.1_Zbtb3_1/Jaspar

Match Rank:5
Score:0.56
Offset:-5
Orientation:forward strand
Alignment:-----CACTCTACCCAGG
AATCGCACTGCATTCCG-
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
C T G A C T G A A C G T A T G C A T C G G T A C C T G A A T G C C G A T A C T G A T G C G T C A A G C T A C G T A T G C A T G C A C T G A C G T

Nkx2-5(var.2)/MA0503.1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:forward strand
Alignment:---CACTCTACCCAGG
AGCCACTCAAG-----
 A C G T A C G T A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
C T G A C T A G T A G C A G T C G C T A A G T C A C G T A G T C G T C A C T G A T A C G A C G T A C G T A C G T A C G T A C G T

Oct4:Sox17(POU,Homeobox,HMG)/F9-Sox17-ChIP-Seq(GSE44553)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CACTCTACCCAGG-
CCATTGTATGCAAAT
 A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G A C G T
A G T C G A T C G C T A C G A T A C G T T A C G G C A T C T G A G A C T A C T G A G T C G C T A C T G A T C G A C A G T

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:5
Orientation:reverse strand
Alignment:CACTCTACCCAGG--
-----TGCCCAGNHW
 A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A

NKX2-8/MA0673.1/Jaspar

Match Rank:9
Score:0.53
Offset:-1
Orientation:forward strand
Alignment:-CACTCTACCCAGG
CCACTTGAA-----
 A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
T A G C G A T C G T C A G A T C A G C T G A C T T A C G G C T A T C G A A C G T A C G T A C G T A C G T A C G T

POL002.1_INR/Jaspar

Match Rank:10
Score:0.52
Offset:-1
Orientation:forward strand
Alignment:-CACTCTACCCAGG
TCAGTCTT------
 A C G T A G T C C G T A G T A C A C G T A T G C A G C T C T G A A G T C T A G C G T A C C G T A C T A G C T A G
C A G T A G T C C G T A A T C G G A C T G A T C A G C T A G C T A C G T A C G T A C G T A C G T A C G T A C G T