Information for 2-GAGTTAGTCT (Motif 28)

A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T
Reverse Opposite:
C G T A A C T G C G T A A G T C A C G T C G T A C G T A A G T C A C G T A G T C
p-value:1e-3
log p-value:-7.913e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif5.88%
Number of Background Sequences with motif1.9
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets86.0 +/- 0.0bp
Average Position of motif in Background39.4 +/- 13.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:1
Score:0.62
Offset:4
Orientation:forward strand
Alignment:GAGTTAGTCT--
----TWGTCTGV
 A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A G C T G C A T A C T G A C G T A G T C A C G T C T A G T A C G

PH0123.1_Obox3/Jaspar

Match Rank:2
Score:0.56
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTAGTCT------
ATAGTTAATCCCCCNNA
 A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T A C G T
C T G A C A G T G C T A C A T G G C A T G C A T C G T A G T C A C A G T G T A C G A T C G A T C G A T C A T G C A G C T T A G C C G T A

PH0124.1_Obox5_1/Jaspar

Match Rank:3
Score:0.55
Offset:-2
Orientation:reverse strand
Alignment:--GAGTTAGTCT-----
NANANTTAATCCCNNNN
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
C A T G C G T A C T G A C T G A C G A T G C A T C G A T C G T A C G T A C G A T G A T C A G T C A G T C A G C T A G T C G A C T C G T A

PB0149.1_Myb_2/Jaspar

Match Rank:4
Score:0.55
Offset:-6
Orientation:reverse strand
Alignment:------GAGTTAGTCT
NNNTGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T
C T A G T A G C T C G A G A C T C T A G C T A G A G T C C T G A A C T G A C G T G A C T C T A G T C A G C A G T G T A C T A C G

PH0107.1_Msx2/Jaspar

Match Rank:5
Score:0.54
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTTAGTCT--
ANCGCTAATTGGTCTNN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T
T C G A C T A G G T A C C T A G G T A C G A C T C G T A C G T A A C G T C G A T C T A G T A C G G A C T A T G C G A C T A C G T A G T C

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:6
Score:0.53
Offset:-1
Orientation:reverse strand
Alignment:-GAGTTAGTCT----
NNAATTAGTCACGGT
 A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

PH0125.1_Obox5_2/Jaspar

Match Rank:7
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GAGTTAGTCT-----
GATAATTAATCCCTCTT
 A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T A C G T A C G T A C G T
A C T G C G T A A G C T C T G A C G T A G C A T C G A T C G T A C G T A C A G T G T A C A G T C A G T C A G C T A G T C G A C T A G C T

PB0150.1_Mybl1_2/Jaspar

Match Rank:8
Score:0.52
Offset:-5
Orientation:reverse strand
Alignment:-----GAGTTAGTCT
CACGGCAGTTGGTNN
 A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T
T G A C C G T A A G T C C A T G C T A G A G T C T C G A A C T G A C G T C A G T C T A G C T A G A C G T T A G C T A C G

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:9
Score:0.52
Offset:2
Orientation:forward strand
Alignment:GAGTTAGTCT--
--VBSYGTCTGG
 A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T A C G T
A C G T A C G T T A C G A T C G T A G C G A T C A C T G A C G T A G T C A C G T C T A G A T C G

PH0092.1_Lhx2/Jaspar

Match Rank:10
Score:0.52
Offset:-6
Orientation:reverse strand
Alignment:------GAGTTAGTCT-
NNNNNCTAATTAGTTTA
 A C G T A C G T A C G T A C G T A C G T A C G T A C T G C G T A A C T G A C G T A C G T C G T A A C T G A C G T A G T C A C G T A C G T
A T C G C A G T A C G T G T A C T C G A G A T C G A C T G T C A C T G A A G C T A C G T C T G A C T A G A G C T C A G T A C G T G C T A