Information for 9-VTGCATATTATGC (Motif 21)

T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
Reverse Opposite:
C T A G G T A C C G T A C G A T G T C A C G T A C G A T C G T A A C G T A C T G A G T C G T C A A C G T
p-value:1e-5
log p-value:-1.226e+01
Information Content per bp:1.732
Number of Target Sequences with motif4.0
Percentage of Target Sequences with motif23.53%
Number of Background Sequences with motif316.0
Percentage of Background Sequences with motif0.68%
Average Position of motif in Targets28.4 +/- 17.9bp
Average Position of motif in Background49.1 +/- 28.7bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Pit1(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:1
Score:0.65
Offset:0
Orientation:forward strand
Alignment:VTGCATATTATGC
ATGMATATDC---
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
G C T A A C G T C T A G G T A C G C T A G A C T C T G A G C A T C A T G G A T C A C G T A C G T A C G T

Brn2(POU,Homeobox)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:2
Score:0.65
Offset:0
Orientation:forward strand
Alignment:VTGCATATTATGC
ATGAATATTC---
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
G C T A A G C T T A C G G T C A C T G A C G A T C T G A G C A T C A G T A G T C A C G T A C G T A C G T

PH0148.1_Pou3f3/Jaspar

Match Rank:3
Score:0.63
Offset:-5
Orientation:forward strand
Alignment:-----VTGCATATTATGC
AAAATATGCATAATAAA-
 A C G T A C G T A C G T A C G T A C G T T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
G C T A G C T A C T A G C G T A G A C T G C T A G A C T C A T G G T A C C T G A C G A T C G T A G C T A C A G T C T G A C G T A C G T A A C G T

OLIG3/MA0827.1/Jaspar

Match Rank:4
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:VTGCATATTATGC
-ANCATATGGT--
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
A C G T C T G A T G C A G T A C C T G A A C G T T G C A G A C T C A T G A C T G A G C T A C G T A C G T

BHLHE22/MA0818.1/Jaspar

Match Rank:5
Score:0.61
Offset:1
Orientation:reverse strand
Alignment:VTGCATATTATGC
-ANCATATGGT--
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
A C G T C T G A T C G A T G A C C T G A A C G T C T G A G A C T A C T G A C T G A G C T A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:6
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:VTGCATATTATGC
-ANCATATGTT--
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
A C G T C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T A C G T A C G T

NEUROG2/MA0669.1/Jaspar

Match Rank:7
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:VTGCATATTATGC
-GACATATGTT--
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
A C G T C T A G T C G A A G T C C G T A A C G T T G C A A G C T C T A G A C G T A G C T A C G T A C G T

BHLHE23/MA0817.1/Jaspar

Match Rank:8
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:VTGCATATTATGC
NAACATATGTTT-
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
G C T A C T G A T G C A T G A C C T G A A C G T T C G A G A C T A C T G A C G T A G C T G C A T A C G T

OLIG1/MA0826.1/Jaspar

Match Rank:9
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:VTGCATATTATGC
-AACATATGTT--
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
A C G T C T G A T G C A G T A C C G T A A C G T T G C A G A C T A C T G A C G T A G C T A C G T A C G T

OLIG2/MA0678.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:reverse strand
Alignment:VTGCATATTATGC
-ACCATATGGT--
 T C G A A C G T C T A G G T A C C G T A A C G T C G T A C G A T A C G T C G T A A C G T A C T G A G T C
A C G T C T G A T G A C G T A C C T G A A C G T C G T A G A C T A C T G A C T G G A C T A C G T A C G T