Information for 1-AGRMKCATCRAKC (Motif 2)

C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C
Reverse Opposite:
A C T G G T C A A C G T A G C T A C T G C G T A A C G T A C T G T G A C A C T G A G C T A G T C C G A T
p-value:1e-9
log p-value:-2.242e+01
Information Content per bp:1.842
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif17.65%
Number of Background Sequences with motif3.7
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets24.7 +/- 25.0bp
Average Position of motif in Background56.9 +/- 21.6bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

HOXA2(Homeobox)/mES-Hoxa2-ChIP-Seq(Donaldson_et_al.)/Homer

Match Rank:1
Score:0.68
Offset:3
Orientation:forward strand
Alignment:AGRMKCATCRAKC--
---GYCATCMATCAT
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T A C G T
A C G T A C G T A C G T T A C G G A C T T G A C C G T A A C G T G A T C G T C A C G T A A C G T A T G C C G T A G A C T

PBX1/MA0070.1/Jaspar

Match Rank:2
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AGRMKCATCRAKC---
----CCATCAATCAAA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T A C G T A C G T
A C G T A C G T A C G T A C G T G A T C A G T C T C G A G A C T A G T C G T C A C G T A A C G T A G T C G C T A C G T A C G T A

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:3
Score:0.67
Offset:4
Orientation:forward strand
Alignment:AGRMKCATCRAKC-
----TCATCAATCA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T
A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A

PB0144.1_Lef1_2/Jaspar

Match Rank:4
Score:0.65
Offset:2
Orientation:forward strand
Alignment:AGRMKCATCRAKC-----
--GAAGATCAATCACTTA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G C G T A T C G A T A C G G C T A C G A T A G T C C G T A C T G A C A G T G A T C C T G A G T A C A G C T G C A T C G T A

Hoxa9/MA0594.1/Jaspar

Match Rank:5
Score:0.62
Offset:3
Orientation:forward strand
Alignment:AGRMKCATCRAKC-
---GCCATAAATCA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T
A C G T A C G T A C G T T A C G G A T C G T A C T C G A A C G T T G C A G C T A G T C A C G A T G A T C G C T A

PH0134.1_Pbx1/Jaspar

Match Rank:6
Score:0.62
Offset:0
Orientation:forward strand
Alignment:AGRMKCATCRAKC----
TCACCCATCAATAAACA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T A C G T A C G T A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:7
Score:0.62
Offset:2
Orientation:reverse strand
Alignment:AGRMKCATCRAKC-
--RGCCATYAATCA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T
A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

PB0188.1_Tcf7l2_2/Jaspar

Match Rank:8
Score:0.62
Offset:2
Orientation:forward strand
Alignment:AGRMKCATCRAKC-----
--GAAGATCAATCACTAA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G C T A G T C G A T A C G G C T A G C A T A G T C C G T A C T G A C A G T G A T C C T G A A T G C A C G T G C T A C G T A

HOXA9(Homeobox)/HSC-Hoxa9-ChIP-Seq(GSE33509)/Homer

Match Rank:9
Score:0.61
Offset:2
Orientation:forward strand
Alignment:AGRMKCATCRAKC-
--GGCCATAAATCA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T
A C G T A C G T C T A G T A C G A G T C G T A C T C G A A C G T G T C A G C T A G C T A C G A T A G T C G C T A

CUX1/MA0754.1/Jaspar

Match Rank:10
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGRMKCATCRAKC-
----TAATCGATAA
 C G T A A C T G C T G A G T A C A C G T A G T C C G T A A C G T A G T C C T G A C G T A A C G T A G T C A C G T
A C G T A C G T A C G T A C G T G A C T C T G A C T G A A G C T A G T C T C A G C G T A G C A T T G C A G T C A