Information for 10-ADDGTCHATBCTTCCA (Motif 17)

C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A
Reverse Opposite:
A G C T T A C G C T A G G T C A C G T A A T C G T A G C C T G A A C G T C A G T A C T G C T G A A G T C G A T C G A C T A G C T
p-value:1e-6
log p-value:-1.418e+01
Information Content per bp:1.631
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif17.65%
Number of Background Sequences with motif47.4
Percentage of Background Sequences with motif0.10%
Average Position of motif in Targets51.3 +/- 27.8bp
Average Position of motif in Background43.6 +/- 33.2bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PB0173.1_Sox21_2/Jaspar

Match Rank:1
Score:0.60
Offset:2
Orientation:forward strand
Alignment:ADDGTCHATBCTTCCA---
--AATCAATTGTTCCGCTA
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A A C G T A C G T A C G T
A C G T A C G T T G A C T C A G A G C T A T G C G C T A C G T A A G C T C G A T A T C G C G A T A G C T A T G C T G A C A C T G G A T C C A G T T C G A

POL008.1_DCE_S_I/Jaspar

Match Rank:2
Score:0.58
Offset:9
Orientation:forward strand
Alignment:ADDGTCHATBCTTCCA
---------GCTTCC-
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C T G A T G C A G C T A C G T A T G C A T G C A C G T

EBNA1(EBV-virus)/Raji-EBNA1-ChIP-Seq(GSE30709)/Homer

Match Rank:3
Score:0.57
Offset:-5
Orientation:reverse strand
Alignment:-----ADDGTCHATBCTTCCA
NNNGGGHAGCAHRTGCTRCC-
 A C G T A C G T A C G T A C G T A C G T C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A
A T G C A G T C G C A T C T A G A C T G C T A G G A C T C G T A C T A G A G T C T G C A G C A T C T G A A C G T T C A G A G T C A C G T C T A G A G T C A G T C A C G T

PB0065.1_Sox15_1/Jaspar

Match Rank:4
Score:0.55
Offset:1
Orientation:reverse strand
Alignment:ADDGTCHATBCTTCCA--
-ANNTCTATTGTTCNNNA
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A A C G T A C G T
A C G T C G T A C G T A T C G A A G C T G A T C G C A T C G T A C G A T C G A T C T A G C G A T G A C T G T A C G C T A G T A C G A C T C G T A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.54
Offset:4
Orientation:forward strand
Alignment:ADDGTCHATBCTTCCA
----NCCATTGTTC--
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A
A C G T A C G T A C G T A C G T A T G C A G T C G A T C C G T A A C G T A C G T A C T G A C G T A G C T G A T C A C G T A C G T

PB0072.1_Sox5_1/Jaspar

Match Rank:6
Score:0.54
Offset:2
Orientation:reverse strand
Alignment:ADDGTCHATBCTTCCA--
--NNTTTATTGTTCTNNN
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A A C G T A C G T
A C G T A C G T G C T A C G A T G C A T G A C T G C A T C G T A G A C T G C A T C T A G G A C T A G C T G A T C G A C T G C T A C G T A G C T A

PB0070.1_Sox30_1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:ADDGTCHATBCTTCCA-
-ANNTCCATTGTTCNNN
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A A C G T
A C G T C T G A C T G A C A G T C G A T A G T C G T A C G C T A A G C T C A G T T C A G C G A T A G C T T A G C G C T A C G A T G A C T

PB0183.1_Sry_2/Jaspar

Match Rank:8
Score:0.53
Offset:2
Orientation:reverse strand
Alignment:ADDGTCHATBCTTCCA---
--CNNNTATTGTTCNNNNN
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A A C G T A C G T A C G T
A C G T A C G T A T G C C T G A A G T C A G T C G A C T C G T A A C G T A G C T T C A G G C A T A C G T A G T C G T A C C A T G G C A T C T A G C T G A

SOX9/MA0077.1/Jaspar

Match Rank:9
Score:0.53
Offset:5
Orientation:forward strand
Alignment:ADDGTCHATBCTTCCA
-----CCATTGTTC--
 C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A
A C G T A C G T A C G T A C G T A C G T A G T C G A T C G C T A C A G T C G A T T A C G C G A T G C A T G A T C A C G T A C G T

PB0073.1_Sox7_1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--ADDGTCHATBCTTCCA----
TNNANNTCTATTGTTNTNNANN
 A C G T A C G T C T G A C G T A C A T G C T A G A G C T G T A C G A C T G T C A A G C T A C T G A T G C A C G T A C G T A G T C A T G C C T G A A C G T A C G T A C G T A C G T
C G A T T C A G C G T A C G T A C T G A C G A T C G A T A G T C G A C T C G T A A G C T C G A T T C A G C G A T G A C T G A T C G C A T C G A T G A C T T G C A C G A T C A G T