Information for 1-WWRCMCATYASTARWG (Motif 1)

C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G
Reverse Opposite:
A G T C C G A T A G C T A C G T C G T A A T C G A C G T C T A G C G T A A C G T A C T G A C T G A C T G A G C T G C A T C G T A
p-value:1e-10
log p-value:-2.364e+01
Information Content per bp:1.800
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif17.65%
Number of Background Sequences with motif2.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets20.0 +/- 8.6bp
Average Position of motif in Background55.2 +/- 18.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

PH0134.1_Pbx1/Jaspar

Match Rank:1
Score:0.62
Offset:0
Orientation:forward strand
Alignment:WWRCMCATYASTARWG-
TCACCCATCAATAAACA
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G A C G T
G A C T A G T C C G T A G A T C G T A C T G A C C T G A C G A T G T A C G T C A G C T A C G A T G T A C G C T A C G A T T G A C T G C A

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:2
Score:0.56
Offset:2
Orientation:reverse strand
Alignment:WWRCMCATYASTARWG
--RGCCATYAATCA--
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G
A C G T A C G T C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A A C G T A C G T

Nanog(Homeobox)/mES-Nanog-ChIP-Seq(GSE11724)/Homer

Match Rank:3
Score:0.55
Offset:2
Orientation:forward strand
Alignment:WWRCMCATYASTARWG
--GGCCATTAAC----
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G
A C G T A C G T C T A G T A C G G A T C G T A C G C T A A G C T A G C T G T C A T C G A T A G C A C G T A C G T A C G T A C G T

BSX/MA0876.1/Jaspar

Match Rank:4
Score:0.54
Offset:3
Orientation:forward strand
Alignment:WWRCMCATYASTARWG
---CCAATTAA-----
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G
A C G T A C G T A C G T T A G C G A T C T G C A T C G A A C G T C G A T C G T A T C G A A C G T A C G T A C G T A C G T A C G T

PB0129.1_Glis2_2/Jaspar

Match Rank:5
Score:0.54
Offset:3
Orientation:forward strand
Alignment:WWRCMCATYASTARWG-
---AATATTAATAAAGA
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G A C G T
A C G T A C G T A C G T G C T A C G T A A C G T C T G A C G A T C A G T C T G A G C T A G C A T G C T A C G T A G T C A C T A G T C G A

POU4F3/MA0791.1/Jaspar

Match Rank:6
Score:0.54
Offset:3
Orientation:reverse strand
Alignment:WWRCMCATYASTARWG---
---CTCATTAATTATGCAT
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G A C G T A C G T A C G T
A C G T A C G T A C G T A G T C C A G T G T A C C T G A G A C T G C A T G C T A G C T A G C A T G C A T G C T A C G A T C A T G G A T C T C G A G A C T

POU6F2/MA0793.1/Jaspar

Match Rank:7
Score:0.54
Offset:1
Orientation:forward strand
Alignment:WWRCMCATYASTARWG
-AGCTCATTAT-----
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G
A C G T C T G A T A C G G A T C C A G T G T A C G T C A A G C T A C G T G C T A G C A T A C G T A C G T A C G T A C G T A C G T

ZNF382(Zf)/HEK293-ZNF382.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:8
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--WWRCMCATYASTARWG--
AADGAGVCANYASTACAGNC
 A C G T A C G T C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G A C G T A C G T
G C T A T C G A C G A T C T A G C T G A C A T G T A G C G T A C C T G A C A T G G A T C G C T A T A G C G A C T C T G A A T G C T G C A C T A G C T G A G A T C

Pdx1(Homeobox)/Islet-Pdx1-ChIP-Seq(SRA008281)/Homer

Match Rank:9
Score:0.52
Offset:4
Orientation:forward strand
Alignment:WWRCMCATYASTARWG
----TCATCAATCA--
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G
A C G T A C G T A C G T A C G T G A C T G T A C T G C A A C G T G A T C G C T A T C G A A C G T A G T C C G T A A C G T A C G T

BARX1/MA0875.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:forward strand
Alignment:WWRCMCATYASTARWG
---GCAATTAG-----
 C G A T C G A T C T G A A G T C G T A C A G T C C G T A A C G T A G T C C G T A T A C G A C G T G T C A C T G A C G T A A C T G
A C G T A C G T A C G T T C A G G A T C T G C A T G C A A C G T A C G T C G T A T C A G A C G T A C G T A C G T A C G T A C G T