Information for 2-AGCMCAAACTTGT (Motif 3)

G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T
Reverse Opposite:
C T G A T A G C C G T A C T G A T A C G A G C T A C G T C G A T C T A G C A T G A T C G A G T C A C G T
p-value:1e-10
log p-value:-2.304e+01
Information Content per bp:1.668
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif24.00%
Number of Background Sequences with motif140.2
Percentage of Background Sequences with motif0.29%
Average Position of motif in Targets43.8 +/- 27.4bp
Average Position of motif in Background48.7 +/- 30.2bp
Strand Bias (log2 ratio + to - strand density)0.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Nr2e3/MA0164.1/Jaspar

Match Rank:1
Score:0.60
Offset:4
Orientation:forward strand
Alignment:AGCMCAAACTTGT
----CAAGCTT--
 G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T
A C G T A C G T A C G T A C G T G A T C C G T A C G T A A T C G A G T C A C G T A C G T A C G T A C G T

Sox6(HMG)/Myotubes-Sox6-ChIP-Seq(GSE32627)/Homer

Match Rank:2
Score:0.54
Offset:6
Orientation:forward strand
Alignment:AGCMCAAACTTGT---
------CCATTGTTNY
 G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A T G C G T A C C G T A A G C T G C A T T A C G A G C T A G C T A G T C A G C T

PB0130.1_Gm397_2/Jaspar

Match Rank:3
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---AGCMCAAACTTGT
AGCGGCACACACGCAA
 A C G T A C G T A C G T G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T
C T G A T C A G G T A C T C A G C T A G T G A C C T G A G A T C T C G A A T G C T G C A G T A C A C T G G A T C T G C A G T C A

PB0165.1_Sox11_2/Jaspar

Match Rank:4
Score:0.52
Offset:5
Orientation:forward strand
Alignment:AGCMCAAACTTGT------
-----AAAATTGTTATGAA
 G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T C G T A C T G A C T G A C T G A A C G T G A C T T C A G C G A T G A C T G C T A C A G T T C A G C T G A C G T A

MF0011.1_HMG_class/Jaspar

Match Rank:5
Score:0.52
Offset:8
Orientation:forward strand
Alignment:AGCMCAAACTTGT-
--------ATTGTT
 G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A C G T G A C T C T A G G C A T A G C T

PB0175.1_Sox4_2/Jaspar

Match Rank:6
Score:0.51
Offset:2
Orientation:forward strand
Alignment:AGCMCAAACTTGT------
--GGAAAAATTGTTAGGAA
 G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T A C G T A C G T A C G T A C G T A C G T A C G T
A C G T A C G T T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A

SRY/MA0084.1/Jaspar

Match Rank:7
Score:0.51
Offset:8
Orientation:reverse strand
Alignment:AGCMCAAACTTGT----
--------ATTGTTTAN
 G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T A C G T A C G T A C G T A C G T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T G C T A A G C T A C G T C T A G C G A T C G A T G C A T G C T A G T A C

p73(p53)/Trachea-p73-ChIP-Seq(PRJNA310161)/Homer

Match Rank:8
Score:0.50
Offset:-4
Orientation:reverse strand
Alignment:----AGCMCAAACTTGT---
RRCATGYCHGGACWTGYYYN
 A C G T A C G T A C G T A C G T G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T A C G T A C G T A C G T
C T A G C T A G A G T C G C T A C G A T A C T G G A C T G A T C G A C T T C A G C T A G C T G A A T G C G C A T C G A T A C T G G A C T G A T C G A C T C G A T

p53(p53)/mES-cMyc-ChIP-Seq(GSE11431)/Homer

Match Rank:9
Score:0.49
Offset:-1
Orientation:reverse strand
Alignment:-AGCMCAAACTTGT
ATGCCCGGGCATGT
 A C G T G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T
G T C A C G A T A C T G A G T C A G T C G A T C C T A G C T A G T C A G A T G C G C T A C G A T A T C G G A C T

SOX10/MA0442.1/Jaspar

Match Rank:10
Score:0.49
Offset:7
Orientation:forward strand
Alignment:AGCMCAAACTTGT
-------CTTTGT
 G T C A T A C G A T G C G T A C A G T C C G T A T G C A T C G A A T G C A G C T C G A T A C T G A G C T
A C G T A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G A T A C G T A C G T A T C G A C G T