Information for 11-CAARAATSRGMWA (Motif 27)

A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
Reverse Opposite:
A C G T G C A T A C G T A G T C A G T C A T C G C G T A A C G T A C G T A G C T A C G T A C G T A C T G
p-value:1e-6
log p-value:-1.474e+01
Information Content per bp:1.836
Number of Target Sequences with motif3.0
Percentage of Target Sequences with motif12.00%
Number of Background Sequences with motif27.9
Percentage of Background Sequences with motif0.06%
Average Position of motif in Targets54.0 +/- 28.3bp
Average Position of motif in Background49.8 +/- 29.5bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox5/MA0087.1/Jaspar

Match Rank:1
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:CAARAATSRGMWA
NAACAAT------
 A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
G C A T C G T A C T G A A G T C C G T A G T C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T

PB0070.1_Sox30_1/Jaspar

Match Rank:2
Score:0.59
Offset:-3
Orientation:forward strand
Alignment:---CAARAATSRGMWA
AATGAACAATGGAATT
 A C G T A C G T A C G T A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
C T G A G C A T C A G T A T C G T C G A C G T A A G T C G C T A C T G A C G A T C A T G T C A G G C T A G T C A G A C T G A C T

MF0011.1_HMG_class/Jaspar

Match Rank:3
Score:0.59
Offset:1
Orientation:reverse strand
Alignment:CAARAATSRGMWA
-AACAAT------
 A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
A C G T T C G A C G T A G A T C C T G A T G C A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

PB0132.1_Hbp1_2/Jaspar

Match Rank:4
Score:0.59
Offset:-3
Orientation:reverse strand
Alignment:---CAARAATSRGMWA-
NNTNNACAATGGGANNN
 A C G T A C G T A C G T A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A A C G T
C G T A T A C G A G C T C G T A A G T C G T C A G T A C C G T A C G T A C G A T C T A G C T A G A C T G T C G A G T C A G A T C G C T A

MEF2C/MA0497.1/Jaspar

Match Rank:5
Score:0.58
Offset:-4
Orientation:forward strand
Alignment:----CAARAATSRGMWA
ATGCTAAAAATAGAA--
 A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A A C G T A C G T

CEBP:CEBP(bZIP)/MEF-Chop-ChIP-Seq(GSE35681)/Homer

Match Rank:6
Score:0.57
Offset:-6
Orientation:forward strand
Alignment:------CAARAATSRGMWA-
NTNATGCAAYMNNHTGMAAY
 A C G T A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A A C G T
T G C A G C A T C G A T C G T A C A G T A C T G G T A C C G T A C T G A A G C T G T C A A C T G C T A G G T C A C G A T A C T G G T A C T G C A C G T A A G C T

PB0067.1_Sox18_1/Jaspar

Match Rank:7
Score:0.56
Offset:-5
Orientation:reverse strand
Alignment:-----CAARAATSRGMWA
NNTNANAACAATTNNA--
 A C G T A C G T A C G T A C G T A C G T A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
C G A T C A G T G C A T C A G T C G T A T C A G C G T A G C T A A G T C G C T A C G T A C G A T C A G T T C A G C G T A T C G A A C G T A C G T

Mef2a(MADS)/HL1-Mef2a.biotin-ChIP-Seq(GSE21529)/Homer

Match Rank:8
Score:0.56
Offset:-1
Orientation:forward strand
Alignment:-CAARAATSRGMWA
CCAAAAATAG----
 A C G T A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
G T A C G A C T C G T A C T G A T C G A C G T A G C T A C A G T C T G A T A C G A C G T A C G T A C G T A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:9
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--CAARAATSRGMWA
DCYAAAAATAGM---
 A C G T A C G T A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T A C G T A C G T

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:10
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:CAARAATSRGMWA
GAACAATGGN---
 A G T C C G T A C G T A C T G A C G T A C G T A A C G T T A C G C T A G A C T G T G A C C G A T C G T A
C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G A C G T A C G T A C G T