Information for 3-ATRGGCTCASADTYBA (Motif 5)

C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
Reverse Opposite:
C A G T T A G C C T G A T C G A G C T A A G C T A T C G C G A T T A C G C T G A C A T G G A T C G A T C A G C T T C G A G A C T
p-value:1e-8
log p-value:-1.957e+01
Information Content per bp:1.571
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif20.69%
Number of Background Sequences with motif211.4
Percentage of Background Sequences with motif0.44%
Average Position of motif in Targets58.8 +/- 24.8bp
Average Position of motif in Background47.5 +/- 26.1bp
Strand Bias (log2 ratio + to - strand density)-2.3
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hnf4a/MA0114.3/Jaspar

Match Rank:1
Score:0.58
Offset:2
Orientation:forward strand
Alignment:ATRGGCTCASADTYBA--
--GGGGTCAAAGTCCAAT
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A A C G T A C G T
A C G T A C G T T C A G T C A G C T A G C A T G C A G T A G T C T C G A C T G A C T G A A C T G A C G T A G T C A G T C C T G A T C G A G A C T

TR4(NR),DR1/Hela-TR4-ChIP-Seq(GSE24685)/Homer

Match Rank:2
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ATRGGCTCASADTYBA
--GAGGTCAAAGGTCA
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
A C G T A C G T T C A G C T G A C T A G C A T G A C G T A T G C C T G A C T G A C T G A C T A G C A T G A C G T A T G C C T G A

RHOXF1/MA0719.1/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:reverse strand
Alignment:ATRGGCTCASADTYBA
--NGGATTAN------
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
A C G T A C G T C A T G C T A G A C T G G T C A A C G T G A C T G C T A C G A T A C G T A C G T A C G T A C G T A C G T A C G T

RXRG/MA0856.1/Jaspar

Match Rank:4
Score:0.57
Offset:2
Orientation:forward strand
Alignment:ATRGGCTCASADTYBA
--GGGGTCAAAGGTCA
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C C T G A C T G A C T G A C A T G C A T G A C G T A G T C T C G A

RXRB/MA0855.1/Jaspar

Match Rank:5
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ATRGGCTCASADTYBA
--GGGGTCAAAGGTCA
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
A C G T A C G T T C A G T C A G C T A G C A T G A C G T A G T C C T G A C T G A T C G A C A T G C A T G A C G T A G T C T C G A

PB0057.1_Rxra_1/Jaspar

Match Rank:6
Score:0.56
Offset:-3
Orientation:reverse strand
Alignment:---ATRGGCTCASADTYBA
NTNNNGGGGTCANGNNN--
 A C G T A C G T A C G T C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
T C G A C A G T A G C T C T G A G C T A T C A G C T A G A C T G A C T G A C G T A G T C C T G A G T A C T C A G C G T A T A G C G C T A A C G T A C G T

Rxra/MA0512.2/Jaspar

Match Rank:7
Score:0.56
Offset:2
Orientation:forward strand
Alignment:ATRGGCTCASADTYBA
--GGGGTCAAAGGTCA
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
A C G T A C G T T C A G T C A G C A T G C A T G A C G T A G T C T C G A C T G A T C G A A T C G A C T G A C G T A G T C T C G A

HNF4G/MA0484.1/Jaspar

Match Rank:8
Score:0.56
Offset:1
Orientation:forward strand
Alignment:ATRGGCTCASADTYBA
-AGAGTCCAAAGTCCA
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
A C G T C G T A T C A G C T G A C T A G C A G T A G T C A G T C T G C A T C G A C T G A C A T G C A G T A G T C G A T C G C T A

HNF4a(NR),DR1/HepG2-HNF4a-ChIP-Seq(GSE25021)/Homer

Match Rank:9
Score:0.56
Offset:0
Orientation:forward strand
Alignment:ATRGGCTCASADTYBA
CANAGNNCAAAGTCCA
 C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
G T A C G C T A T C A G C T G A C T A G C A T G A G C T G A T C T G C A T C G A C T G A A C T G C A G T A G T C G A T C G C T A

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.55
Offset:-1
Orientation:forward strand
Alignment:-ATRGGCTCASADTYBA
AATTTGCTGAC------
 A C G T C G T A A C G T C T G A C A T G C A T G G A T C G A C T A G T C C G T A T A G C T C G A C A G T A G C T A G C T A T C G G C T A
C G T A C G T A G C A T G C A T G A C T T C A G G T A C G C A T C A T G G C T A A G T C A C G T A C G T A C G T A C G T A C G T A C G T