Information for 23-GCAGGCAAATATAGAA (Motif 43)

A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
Reverse Opposite:
A C G T A C G T A G T C A C G T C G T A A C G T C G T A A C G T A C G T A C G T A C T G A G T C A G T C A C G T A C T G A G T C
p-value:1e-3
log p-value:-7.630e+00
Information Content per bp:1.530
Number of Target Sequences with motif1.0
Percentage of Target Sequences with motif4.55%
Number of Background Sequences with motif0.0
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets84.0 +/- 0.0bp
Average Position of motif in Background0.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)10.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

SD0002.1_at_AC_acceptor/Jaspar

Match Rank:1
Score:0.61
Offset:1
Orientation:forward strand
Alignment:GCAGGCAAATATAGAA
-AAGGCAAGTGT----
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
A C G T T G C A C G T A C T A G A C T G A G T C T C G A C T G A T A C G A C G T C T A G A G C T A C G T A C G T A C G T A C G T

MEF2C/MA0497.1/Jaspar

Match Rank:2
Score:0.58
Offset:1
Orientation:forward strand
Alignment:GCAGGCAAATATAGAA
-ATGCTAAAAATAGAA
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
A C G T C T G A C G A T C A T G G T A C A G C T G C T A C T G A C T G A C G T A C G T A G A C T C T G A T C A G G T C A G C T A

PB0186.1_Tcf3_2/Jaspar

Match Rank:3
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GCAGGCAAATATAGAA-
--AGCCGAAAAAAAAAT
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A A C G T
A C G T A C G T C T G A T A C G A T G C T A G C A C T G C G T A C T G A G C T A G C T A G C T A T G C A G C T A T C G A G C T A G C A T

Mef2d(MADS)/Retina-Mef2d-ChIP-Seq(GSE61391)/Homer

Match Rank:4
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCAGGCAAATATAGAA
---GCTAAAAATAGC-
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A C T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G C A T C T G A T C A G G T A C A C G T

POU2F2/MA0507.1/Jaspar

Match Rank:5
Score:0.56
Offset:0
Orientation:reverse strand
Alignment:GCAGGCAAATATAGAA
ATATGCAAATNNN---
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
C G T A G A C T C T G A A C G T C T A G G A T C C G T A C G T A C G T A C G A T C A T G G T C A C T G A A C G T A C G T A C G T

Mef2b(MADS)/HEK293-Mef2b.V5-ChIP-Seq(GSE67450)/Homer

Match Rank:6
Score:0.56
Offset:3
Orientation:reverse strand
Alignment:GCAGGCAAATATAGAA
---KCCAAAAATAGC-
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A C T G G T A C G A T C G C T A C G T A C T G A C G T A C G T A G C A T C T G A T C A G G T A C A C G T

Mef2c(MADS)/GM12878-Mef2c-ChIP-Seq(GSE32465)/Homer

Match Rank:7
Score:0.55
Offset:3
Orientation:forward strand
Alignment:GCAGGCAAATATAGAA
---DCYAAAAATAGM-
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
A C G T A C G T A C G T C A T G G T A C G A C T G C T A C G T A C G T A C G T A G C T A G A C T C T G A T C A G G T A C A C G T

MF0008.1_MADS_class/Jaspar

Match Rank:8
Score:0.55
Offset:4
Orientation:reverse strand
Alignment:GCAGGCAAATATAGAA
----CCATATATGG--
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
A C G T A C G T A C G T A C G T G T A C G A T C C G T A G C A T C G T A G C A T G C T A C G A T T C A G C T A G A C G T A C G T

FOXM1(Forkhead)/MCF7-FOXM1-ChIP-Seq(GSE72977)/Homer

Match Rank:9
Score:0.54
Offset:1
Orientation:reverse strand
Alignment:GCAGGCAAATATAGAA
-WAAGTAAAYA-----
 A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
A C G T G C A T T C G A C T G A T C A G A G C T G T C A G T C A C T G A A G T C T G C A A C G T A C G T A C G T A C G T A C G T

Arnt:Ahr(bHLH)/MCF7-Arnt-ChIP-Seq(Lo_et_al.)/Homer

Match Rank:10
Score:0.53
Offset:-2
Orientation:forward strand
Alignment:--GCAGGCAAATATAGAA
TBGCACGCAA--------
 A C G T A C G T A C T G A G T C C G T A A C T G A C T G A G T C C G T A C G T A C G T A A C G T C G T A A C G T C G T A A C T G C G T A C G T A
G C A T A T C G C A T G G T A C G C T A A G T C T C A G T G A C G T C A T G C A A C G T A C G T A C G T A C G T A C G T A C G T A C G T A C G T