Information for 4-CTGSCCAGCATCA (Motif 5)

A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
Reverse Opposite:
A C G T A C T G C T G A A C G T A C T G T G A C A G C T C T A G C T A G A T G C A G T C C G T A A T C G
p-value:1e-10
log p-value:-2.505e+01
Information Content per bp:1.824
Number of Target Sequences with motif5.0
Percentage of Target Sequences with motif0.60%
Number of Background Sequences with motif0.8
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets53.4 +/- 24.7bp
Average Position of motif in Background9.0 +/- 0.0bp
Strand Bias (log2 ratio + to - strand density)-0.6
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Hand2(bHLH)/Mesoderm-Hand2-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.67
Offset:-2
Orientation:reverse strand
Alignment:--CTGSCCAGCATCA
GYCTGGYYTNTGTCA
 A C G T A C G T A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
A T C G A G C T A G T C A C G T A C T G A T C G A G C T G A C T G C A T A G C T G A C T T A C G A G C T G A T C G C T A

ZNF416(Zf)/HEK293-ZNF416.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:2
Score:0.58
Offset:1
Orientation:reverse strand
Alignment:CTGSCCAGCATCA
-TGCCCAGNHW--
 A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
A C G T C G A T C A T G A G T C G A T C G T A C G C T A C T A G C A T G G A T C C G T A A C G T A C G T

Rfx6(HTH)/Min6b1-Rfx6.HA-ChIP-Seq(GSE62844)/Homer

Match Rank:3
Score:0.57
Offset:-2
Orientation:forward strand
Alignment:--CTGSCCAGCATCA
TGTTKCCTAGCAACM
 A C G T A C G T A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
C A G T T C A G A G C T G A C T A C G T A G T C G A T C G A C T C T G A A C T G G A T C C G T A C T G A A G T C G T A C

ZNF669(Zf)/HEK293-ZNF669.GFP-ChIP-Seq(GSE58341)/Homer

Match Rank:4
Score:0.55
Offset:-2
Orientation:forward strand
Alignment:--CTGSCCAGCATCA
GARTGGTCATCGCCC
 A C G T A C G T A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
T A C G C G T A T C A G G A C T C T A G A C T G C A G T T A G C T C G A A C G T G T A C C T A G A G T C A G T C G A T C

Pbx3(Homeobox)/GM12878-PBX3-ChIP-Seq(GSE32465)/Homer

Match Rank:5
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGSCCAGCATCA
NCTGTCAATCAN--
 A C G T A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
T A G C T A G C G A C T C T A G A G C T A G T C G T C A T G C A A C G T A T G C G C T A T G C A A C G T A C G T

Rfx5(HTH)/GM12878-Rfx5-ChIP-Seq(GSE31477)/Homer

Match Rank:6
Score:0.54
Offset:2
Orientation:forward strand
Alignment:CTGSCCAGCATCA-
--SCCTAGCAACAG
 A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A A C G T
A C G T A C G T A T G C A G T C G T A C A G C T T C G A C T A G G A T C C T G A G T C A A G T C G C T A T C A G

Pknox1(Homeobox)/ES-Prep1-ChIP-Seq(GSE63282)/Homer

Match Rank:7
Score:0.54
Offset:-1
Orientation:forward strand
Alignment:-CTGSCCAGCATCA
SCTGTCAVTCAV--
 A C G T A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
T A C G A T G C G A C T A C T G A G C T A G T C G T C A T G C A A C G T A G T C G C T A T G C A A C G T A C G T

HIC2/MA0738.1/Jaspar

Match Rank:8
Score:0.54
Offset:0
Orientation:forward strand
Alignment:CTGSCCAGCATCA
ATGCCCACC----
 A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
T C G A A G C T T C A G T G A C G T A C G T A C T C G A T A G C A G T C A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:9
Score:0.53
Offset:0
Orientation:forward strand
Alignment:CTGSCCAGCATCA
CTGTCTGTCACCT
 A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A
T A G C G C A T T C A G A C G T A G T C A C G T T A C G C A G T A T G C G C T A T A G C G A T C G A C T

NRL/MA0842.1/Jaspar

Match Rank:10
Score:0.52
Offset:3
Orientation:reverse strand
Alignment:CTGSCCAGCATCA-
---GTCAGCANNTN
 A T G C A C G T A C T G A T C G A G T C A G T C C T G A A C T G A G T C C G T A A G C T A G T C G T C A A C G T
A C G T A C G T A C G T T C A G C G A T G T A C C G T A C A T G A G T C C T G A C G T A C G T A G C A T G C A T