Information for 2-GCTCCAGACAGGG (Motif 3)

A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
Reverse Opposite:
A T G C A G T C G A T C A C G T A T C G A C G T A G T C A C G T A C T G A C T G G T C A A C T G A G T C
p-value:1e-11
log p-value:-2.570e+01
Information Content per bp:1.938
Number of Target Sequences with motif7.0
Percentage of Target Sequences with motif0.85%
Number of Background Sequences with motif5.9
Percentage of Background Sequences with motif0.01%
Average Position of motif in Targets55.6 +/- 31.4bp
Average Position of motif in Background47.3 +/- 13.3bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Smad2(MAD)/ES-SMAD2-ChIP-Seq(GSE29422)/Homer

Match Rank:1
Score:0.73
Offset:3
Orientation:reverse strand
Alignment:GCTCCAGACAGGG
---CCAGACAG--
 A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
A C G T A C G T A C G T A T G C A G T C T G C A C T A G G T C A G T A C C T G A T A C G A C G T A C G T

PB0060.1_Smad3_1/Jaspar

Match Rank:2
Score:0.71
Offset:-2
Orientation:forward strand
Alignment:--GCTCCAGACAGGG--
CAAATCCAGACATCACA
 A C G T A C G T A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G A C G T A C G T
G T A C C T G A C G T A C G T A C G A T A G T C A G T C T G C A C T A G G T C A G T A C C T G A A C G T A G T C G C T A T A C G G T C A

Smad4(MAD)/ESC-SMAD4-ChIP-Seq(GSE29422)/Homer

Match Rank:3
Score:0.71
Offset:3
Orientation:reverse strand
Alignment:GCTCCAGACAGGG
---CCAGACRSVB
 A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
A C G T A C G T A C G T T A G C A G T C C G T A A C T G C G T A A G T C C T A G A T C G T A G C A T G C

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:4
Score:0.63
Offset:3
Orientation:reverse strand
Alignment:GCTCCAGACAGGG
---BCAGACWA--
 A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
A C G T A C G T A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T A C G T

Hand1::Tcf3/MA0092.1/Jaspar

Match Rank:5
Score:0.60
Offset:0
Orientation:reverse strand
Alignment:GCTCCAGACAGGG
ATGCCAGACN---
 A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
C G T A G C A T C A T G T A G C A G T C C G T A C T A G C G T A G A T C T A G C A C G T A C G T A C G T

POL013.1_MED-1/Jaspar

Match Rank:6
Score:0.57
Offset:0
Orientation:forward strand
Alignment:GCTCCAGACAGGG
GCTCCG-------
 A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
A C T G A G T C A C G T A G T C A G T C A T C G A C G T A C G T A C G T A C G T A C G T A C G T A C G T

SMAD2::SMAD3::SMAD4/MA0513.1/Jaspar

Match Rank:7
Score:0.56
Offset:-2
Orientation:reverse strand
Alignment:--GCTCCAGACAGGG
AGGTGNCAGACAG--
 A C G T A C G T A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
C T G A C T A G A T C G C G A T A T C G G T C A A T G C C G T A A C T G T G C A A G T C C G T A A T C G A C G T A C G T

Tbox:Smad(T-box,MAD)/ESCd5-Smad2_3-ChIP-Seq(GSE29422)/Homer

Match Rank:8
Score:0.56
Offset:-2
Orientation:forward strand
Alignment:--GCTCCAGACAGGG
AGGTGHCAGACA---
 A C G T A C G T A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
C T G A C T A G A T C G G C A T A C T G G T A C A T G C C G T A A C T G G C T A A G T C C G T A A C G T A C G T A C G T

SMAD3/MA0795.1/Jaspar

Match Rank:9
Score:0.54
Offset:0
Orientation:forward strand
Alignment:GCTCCAGACAGGG
CGTCTAGACA---
 A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
G A T C C T A G C G A T T A G C A G C T T G C A A T C G G T C A G A T C G C T A A C G T A C G T A C G T

INSM1/MA0155.1/Jaspar

Match Rank:10
Score:0.53
Offset:-2
Orientation:reverse strand
Alignment:--GCTCCAGACAGGG
CGCCCCCTGACA---
 A C G T A C G T A C T G A G T C A C G T A G T C A G T C C G T A A C T G C G T A A T G C C G T A C T A G A C T G A T C G
G A T C C T A G T G A C A G T C A G T C A T G C A G T C C G A T C A T G T C G A G T A C G T C A A C G T A C G T A C G T