Information for 1-CCCATTTGTC (Motif 9)

A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
Reverse Opposite:
C T A G T G C A A G T C C G T A C G T A C G T A A C G T A C T G A C T G C T A G
p-value:1e-11
log p-value:-2.563e+01
Information Content per bp:1.903
Number of Target Sequences with motif16.0
Percentage of Target Sequences with motif2.67%
Number of Background Sequences with motif125.1
Percentage of Background Sequences with motif0.25%
Average Position of motif in Targets50.6 +/- 26.3bp
Average Position of motif in Background48.9 +/- 27.2bp
Strand Bias (log2 ratio + to - strand density)-0.4
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Bhlha15/MA0607.1/Jaspar

Match Rank:1
Score:0.70
Offset:1
Orientation:forward strand
Alignment:CCCATTTGTC
-CCATATGT-
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
A C G T T A G C A G T C C G T A A C G T G T C A A C G T A C T G A G C T A C G T

Twist2/MA0633.1/Jaspar

Match Rank:2
Score:0.68
Offset:0
Orientation:forward strand
Alignment:CCCATTTGTC
ACCATATGTT
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
C T G A G T A C A G T C C G T A A G C T C T G A A C G T A C T G A C G T A C G T

NeuroG2(bHLH)/Fibroblast-NeuroG2-ChIP-Seq(GSE75910)/Homer

Match Rank:3
Score:0.67
Offset:0
Orientation:forward strand
Alignment:CCCATTTGTC
ACCATCTGTT
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
T C G A T G A C G T A C C G T A C A G T T G A C A C G T A C T G A G C T A G C T

NFY(CCAAT)/Promoter/Homer

Match Rank:4
Score:0.66
Offset:0
Orientation:reverse strand
Alignment:CCCATTTGTC
CCGATTGGCT
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
A T G C A G T C A T C G C G T A A C G T A C G T A C T G A C T G G A T C A G C T

Hoxb4(Homeobox)/ES-Hoxb4-ChIP-Seq(GSE34014)/Homer

Match Rank:5
Score:0.66
Offset:-1
Orientation:reverse strand
Alignment:-CCCATTTGTC-
RGCCATYAATCA
 A C G T A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C A C G T
C T A G T A C G G A T C T G A C T C G A A C G T G A C T G C T A T C G A A G C T G A T C G C T A

NeuroD1(bHLH)/Islet-NeuroD1-ChIP-Seq(GSE30298)/Homer

Match Rank:6
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCCATTTGTC
GCCATCTGTT
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
T C A G T G A C G T A C C G T A A C G T T G A C A C G T T C A G A G C T G A C T

Olig2(bHLH)/Neuron-Olig2-ChIP-Seq(GSE30882)/Homer

Match Rank:7
Score:0.65
Offset:0
Orientation:forward strand
Alignment:CCCATTTGTC
RCCATMTGTT
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
C T G A T G A C T G A C C G T A A C G T T G A C A G C T C T A G A C G T G A C T

PAX3:FKHR-fusion(Paired,Homeobox)/Rh4-PAX3:FKHR-ChIP-Seq(GSE19063)/Homer

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CCCATTTGTC-----
NNAATTAGTCACGGT
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C A C G T A C G T A C G T A C G T A C G T
A G C T G A T C T C G A C G T A A C G T A G C T C G T A A C T G G A C T G A T C G T C A G A T C C T A G A T C G G C A T

Isl1(Homeobox)/Neuron-Isl1-ChIP-Seq(GSE31456)/Homer

Match Rank:9
Score:0.63
Offset:0
Orientation:reverse strand
Alignment:CCCATTTGTC
BCMATTAG--
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
A C T G A G T C G T C A G T C A A C G T A G C T C G T A T C A G A C G T A C G T

Atoh1/MA0461.2/Jaspar

Match Rank:10
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CCCATTTGTC
ANCATATGTT
 A G T C A G T C A G T C C G T A A C G T C G A T C G A T A C T G A C G T G A T C
C T G A T G C A G T A C G C T A A C G T G T C A A G C T A C T G A C G T A G C T