Information for 2-GRAATAKTTSMTGTWG (Motif 2)

A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
Reverse Opposite:
A G T C C G A T C G T A G T A C C G T A A C G T A T C G G T C A C G T A G T A C C G A T C G T A A C G T A C G T A G C T G T A C
p-value:1e-14
log p-value:-3.310e+01
Information Content per bp:1.795
Number of Target Sequences with motif6.0
Percentage of Target Sequences with motif1.00%
Number of Background Sequences with motif1.3
Percentage of Background Sequences with motif0.00%
Average Position of motif in Targets48.0 +/- 25.0bp
Average Position of motif in Background55.7 +/- 8.5bp
Strand Bias (log2 ratio + to - strand density)-1.0
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

POU4F1/MA0790.1/Jaspar

Match Rank:1
Score:0.60
Offset:-1
Orientation:forward strand
Alignment:-GRAATAKTTSMTGTWG
ATGAATAATTAATG---
 A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
T C G A G A C T C T A G G T C A G C T A C G A T C G T A C G T A C G A T C G A T C G T A T C G A G A C T C A T G A C G T A C G T A C G T

POU4F3/MA0791.1/Jaspar

Match Rank:2
Score:0.59
Offset:-1
Orientation:forward strand
Alignment:-GRAATAKTTSMTGTWG
ATGCATAATTAATGAG-
 A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
C T G A A G C T C A T G G T A C G C T A C G A T C G T A C G T A C G A T C G A T C G T A C T G A G A C T C A T G G T C A T C A G A C G T

Arid5a/MA0602.1/Jaspar

Match Rank:3
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GRAATAKTTSMTGTWG
NNTNNCAATATTAG------
 A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

PB0002.1_Arid5a_1/Jaspar

Match Rank:4
Score:0.59
Offset:-4
Orientation:reverse strand
Alignment:----GRAATAKTTSMTGTWG
NNTNNCAATATTAG------
 A C G T A C G T A C G T A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
C G A T G C A T G A C T G C T A A C T G G A T C C T G A C G T A C G A T G C T A G C A T G A C T C T G A A T C G A C G T A C G T A C G T A C G T A C G T A C G T

OCT:OCT(POU,Homeobox,IR1)/NPC-Brn2-ChIP-Seq(GSE35496)/Homer

Match Rank:5
Score:0.57
Offset:-1
Orientation:forward strand
Alignment:-GRAATAKTTSMTGTWG
ATGAATWATTCATGA--
 A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
G T C A A C G T C T A G G T C A C G T A G C A T C G T A C G T A G C A T C A G T A G T C C G T A C A G T C T A G C T G A A C G T A C G T

MF0010.1_Homeobox_class/Jaspar

Match Rank:6
Score:0.57
Offset:2
Orientation:forward strand
Alignment:GRAATAKTTSMTGTWG
--AATAATT-------
 A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
A C G T A C G T G C T A C G T A G C A T C T G A C T G A C G A T C G A T A C G T A C G T A C G T A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:7
Score:0.56
Offset:5
Orientation:forward strand
Alignment:GRAATAKTTSMTGTWG
-----ATTTCCTGTN-
 A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T T C G A A G C T A C G T A C G T A G T C A G T C A C G T A T C G G A C T A T C G A C G T

EWS:FLI1-fusion(ETS)/SK_N_MC-EWS:FLI1-ChIP-Seq(SRA014231)/Homer

Match Rank:8
Score:0.55
Offset:5
Orientation:reverse strand
Alignment:GRAATAKTTSMTGTWG
-----ATTTCCTGTN-
 A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
A C G T A C G T A C G T A C G T A C G T C T G A A G C T A C G T A C G T A G T C A G T C A C G T A C T G G A C T A C G T A C G T

Pit1+1bp(Homeobox)/GCrat-Pit1-ChIP-Seq(GSE58009)/Homer

Match Rank:9
Score:0.55
Offset:0
Orientation:reverse strand
Alignment:GRAATAKTTSMTGTWG
TGAATTATGCAT----
 A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
C G A T C T A G G T C A G C T A C G A T G C A T G C T A C G A T C A T G G A T C G C T A C G A T A C G T A C G T A C G T A C G T

PB0175.1_Sox4_2/Jaspar

Match Rank:10
Score:0.54
Offset:-3
Orientation:forward strand
Alignment:---GRAATAKTTSMTGTWG
GGAAAAATTGTTAGGAA--
 A C G T A C G T A C G T A C T G C T A G C G T A C G T A A C G T C G T A A C G T A C G T A C G T A T C G G T A C A C G T A C T G C G A T C G A T A C T G
T A C G T C A G G C T A C G T A C T G A C T G A C T G A A G C T C G A T T C A G C G A T G A C T C T G A T A C G C T A G C T G A C T G A A C G T A C G T