Information for 9-CGCAGCCAAT (Motif 11)

T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T
Reverse Opposite:
T G C A C G A T G C A T A C T G T A C G A T G C A G C T T A C G A G T C A T C G
p-value:1e-11
log p-value:-2.557e+01
Information Content per bp:1.656
Number of Target Sequences with motif41.0
Percentage of Target Sequences with motif4.46%
Number of Background Sequences with motif571.7
Percentage of Background Sequences with motif1.25%
Average Position of motif in Targets52.3 +/- 23.8bp
Average Position of motif in Background51.1 +/- 31.2bp
Strand Bias (log2 ratio + to - strand density)-0.2
Multiplicity (# of sites on avg that occur together)1.00
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NFY(CCAAT)/Promoter/Homer

Match Rank:1
Score:0.78
Offset:3
Orientation:forward strand
Alignment:CGCAGCCAAT---
---AGCCAATCGG
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T A C G T A C G T A C G T
A C G T A C G T A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:2
Score:0.76
Offset:0
Orientation:forward strand
Alignment:CGCAGCCAAT--
ACTAGCCAATCA
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T A C G T A C G T
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Smad3(MAD)/NPC-Smad3-ChIP-Seq(GSE36673)/Homer

Match Rank:3
Score:0.73
Offset:1
Orientation:reverse strand
Alignment:CGCAGCCAAT
-BCAGACWA-
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T
A C G T A T G C A G T C C G T A C T A G G T C A A G T C C G T A T C G A A C G T

NFIC/MA0161.1/Jaspar

Match Rank:4
Score:0.70
Offset:3
Orientation:reverse strand
Alignment:CGCAGCCAAT
---TGCCAA-
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T
A C G T A C G T A C G T G C A T C A T G G A T C A G T C G T C A C T G A A C G T

NFIX/MA0671.1/Jaspar

Match Rank:5
Score:0.68
Offset:1
Orientation:forward strand
Alignment:CGCAGCCAAT
-CGTGCCAAG
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T
A C G T T A G C C A T G G C A T A C T G A T G C A G T C T G C A C T G A T A C G

NFYB/MA0502.1/Jaspar

Match Rank:6
Score:0.66
Offset:-2
Orientation:forward strand
Alignment:--CGCAGCCAAT---
AAATGGACCAATCAG
 A C G T A C G T T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T A C G T A C G T A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

POL010.1_DCE_S_III/Jaspar

Match Rank:7
Score:0.65
Offset:2
Orientation:forward strand
Alignment:CGCAGCCAAT
--CAGCC---
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T
A C G T A C G T T A G C C G T A A C T G A G T C A T G C A C G T A C G T A C G T

POL009.1_DCE_S_II/Jaspar

Match Rank:8
Score:0.64
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCAAT
CACAGN----
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T
T A G C C T G A T A G C G T C A A C T G A T G C A C G T A C G T A C G T A C G T

EWS:ERG-fusion(ETS)/CADO_ES1-EWS:ERG-ChIP-Seq(SRA014231)/Homer

Match Rank:9
Score:0.62
Offset:0
Orientation:reverse strand
Alignment:CGCAGCCAAT
NACAGGAAAT
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T
T A G C C T G A T A G C G T C A A C T G A C T G C G T A C G T A C T G A A G C T

NFIA/MA0670.1/Jaspar

Match Rank:10
Score:0.60
Offset:1
Orientation:forward strand
Alignment:CGCAGCCAAT-
-GGTGCCAAGT
 T A G C T C A G A T G C T C G A A T C G A T G C G T A C C G T A G C T A A C G T A C G T
A C G T T C A G C A T G A C G T A C T G A G T C A G T C C G T A C G T A T C A G C G A T