Information for 10-CAACCAATGG (Motif 16)

A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G
Reverse Opposite:
A G T C A T G C G C T A A G C T A G C T A C T G A T C G A G C T A C G T T A C G
p-value:1e-8
log p-value:-1.947e+01
Information Content per bp:1.689
Number of Target Sequences with motif29.0
Percentage of Target Sequences with motif3.23%
Number of Background Sequences with motif405.6
Percentage of Background Sequences with motif0.87%
Average Position of motif in Targets49.3 +/- 27.6bp
Average Position of motif in Background47.7 +/- 29.0bp
Strand Bias (log2 ratio + to - strand density)0.5
Multiplicity (# of sites on avg that occur together)1.07
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

Sox17(HMG)/Endoderm-Sox17-ChIP-Seq(GSE61475)/Homer

Match Rank:1
Score:0.78
Offset:0
Orientation:reverse strand
Alignment:CAACCAATGG
VRAACAATGG
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G
T G A C C T G A T C G A C G T A T A G C G T C A T C G A G C A T C T A G T A C G

NFY(CCAAT)/Promoter/Homer

Match Rank:2
Score:0.78
Offset:1
Orientation:forward strand
Alignment:CAACCAATGG-
-AGCCAATCGG
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G A C G T
A C G T T C G A C T A G A G T C A G T C C G T A C G T A A C G T T A G C T C A G T A C G

SOX9/MA0077.1/Jaspar

Match Rank:3
Score:0.75
Offset:1
Orientation:reverse strand
Alignment:CAACCAATGG
-GAACAATGG
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G
A C G T C T A G C G T A G C T A A G T C G C T A G C T A C G A T C T A G T A C G

POL004.1_CCAAT-box/Jaspar

Match Rank:4
Score:0.74
Offset:-2
Orientation:forward strand
Alignment:--CAACCAATGG
ACTAGCCAATCA
 A C G T A C G T A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G
G T C A A G T C G A C T C T G A C T A G A G T C A G T C C G T A C G T A C G A T T A G C T C G A

Sox2(HMG)/mES-Sox2-ChIP-Seq(GSE11431)/Homer

Match Rank:5
Score:0.72
Offset:1
Orientation:reverse strand
Alignment:CAACCAATGG-
-GAACAATGGN
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G A C G T
A C G T C T A G T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G T A C G

Sox15(HMG)/CPA-Sox15-ChIP-Seq(GSE62909)/Homer

Match Rank:6
Score:0.72
Offset:1
Orientation:forward strand
Alignment:CAACCAATGG-
-RAACAATGGN
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G A C G T
A C G T C T G A T C G A C G T A A T G C C G T A C G T A C G A T C T A G T C A G G A T C

NFYB/MA0502.1/Jaspar

Match Rank:7
Score:0.72
Offset:-4
Orientation:forward strand
Alignment:----CAACCAATGG-
AAATGGACCAATCAG
 A C G T A C G T A C G T A C G T A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G A C G T
T C G A G T C A G T C A A G C T A T C G T C A G C T G A A G T C A G T C C G T A C T G A A C G T T A G C T C G A T A C G

Sox2/MA0143.3/Jaspar

Match Rank:8
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CAACCAATGG
--AACAAAGG
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G
A C G T A C G T T C G A C G T A A G T C C G T A C G T A C G T A A C T G A C T G

Sox3(HMG)/NPC-Sox3-ChIP-Seq(GSE33059)/Homer

Match Rank:9
Score:0.71
Offset:2
Orientation:reverse strand
Alignment:CAACCAATGG
--RACAAWGG
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G
A C G T A C G T T C G A G T C A T G A C C G T A C G T A C G T A C T A G T A C G

Sox6/MA0515.1/Jaspar

Match Rank:10
Score:0.70
Offset:0
Orientation:reverse strand
Alignment:CAACCAATGG
AAAACAATGG
 A T G C T G C A T C G A T A G C G T A C C T G A C T G A C G A T A T C G T C A G
T C G A C T G A T C G A C G T A A G T C C G T A C G T A C G A T C T A G T C A G