Information for 10-TGGGACTTAA (Motif 7)

G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A
Reverse Opposite:
A G C T C G A T C G T A C T G A A T C G C G A T A T G C G T A C A G T C C T G A
p-value:1e-13
log p-value:-3.115e+01
Information Content per bp:1.696
Number of Target Sequences with motif43.0
Percentage of Target Sequences with motif4.64%
Number of Background Sequences with motif518.0
Percentage of Background Sequences with motif1.14%
Average Position of motif in Targets51.6 +/- 27.9bp
Average Position of motif in Background50.5 +/- 32.8bp
Strand Bias (log2 ratio + to - strand density)0.3
Multiplicity (# of sites on avg that occur together)1.13
Motif File:file (matrix)
reverse opposite
SVG Files for Logos:forward logo
reverse opposite

Matches to Known Motifs

NKX3-2/MA0122.2/Jaspar

Match Rank:1
Score:0.64
Offset:1
Orientation:forward strand
Alignment:TGGGACTTAA
-ACCACTTAA
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A
A C G T T C G A T A G C G A T C G C T A G T A C A G C T G A C T G C T A C T G A

RORgt(NR)/EL4-RORgt.Flag-ChIP-Seq(GSE56019)/Homer

Match Rank:2
Score:0.63
Offset:2
Orientation:reverse strand
Alignment:TGGGACTTAA--
--TGACCTARTT
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A A C G T A C G T
A C G T A C G T A G C T C T A G T C G A A G T C A T G C A G C T T G C A T C A G G C A T C G A T

ISL2/MA0914.1/Jaspar

Match Rank:3
Score:0.62
Offset:2
Orientation:forward strand
Alignment:TGGGACTTAA
--GCACTTAA
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A
A C G T A C G T T A C G G A T C G C T A G T A C C G A T G A C T G C T A C T G A

Nkx3-1/MA0124.2/Jaspar

Match Rank:4
Score:0.62
Offset:1
Orientation:forward strand
Alignment:TGGGACTTAA
-ACCACTTAA
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A
A C G T T C G A T A G C A G T C G C T A G T A C A G C T A G C T G C T A C T G A

Crem/MA0609.1/Jaspar

Match Rank:5
Score:0.62
Offset:0
Orientation:forward strand
Alignment:TGGGACTTAA
TATGACGTAA
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A
A C G T C T G A A C G T A C T G C G T A A G T C A C T G A C G T G T C A C G T A

RORA(var.2)/MA0072.1/Jaspar

Match Rank:6
Score:0.62
Offset:1
Orientation:reverse strand
Alignment:TGGGACTTAA-----
-TTGACCTANTTATN
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
A C G T A G C T A C G T A C T G C G T A A G T C A G T C A G C T C G T A T A G C C G A T A C G T G C T A G C A T C G T A

PH0067.1_Hoxc12/Jaspar

Match Rank:7
Score:0.61
Offset:-1
Orientation:forward strand
Alignment:-TGGGACTTAA------
TTAGGTCGTAAAATTTC
 A C G T G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T A C G T
G A C T G C A T T C G A T C A G T C A G A G C T G T A C C T A G A C G T G C T A C G T A G C T A G C T A G C A T A G C T C G A T G A T C

Atf1/MA0604.1/Jaspar

Match Rank:8
Score:0.60
Offset:1
Orientation:forward strand
Alignment:TGGGACTTAA
-ATGACGTA-
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A
A C G T T C G A G C A T A C T G C G T A A G T C C T A G G A C T T C G A A C G T

PH0065.1_Hoxc10/Jaspar

Match Rank:9
Score:0.58
Offset:-1
Orientation:forward strand
Alignment:-TGGGACTTAA-----
TAAAGTCGTAAAACGT
 A C G T G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A A C G T A C G T A C G T A C G T A C G T
G A C T C G T A C G T A C T G A T C A G A G C T G T A C C T A G A C G T C G T A C G T A G C T A C G T A G A T C A T C G A C G T

RORA/MA0071.1/Jaspar

Match Rank:10
Score:0.58
Offset:2
Orientation:reverse strand
Alignment:TGGGACTTAA--
--TGACCTTGAT
 G A C T C T A G C A T G A T C G C G T A A T G C G A C T C G A T C G T A C T G A A C G T A C G T
A C G T A C G T A C G T A C T G C G T A A G T C A G T C A G C T G C A T A C T G C G T A G C A T